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Protein
Submitted name:

cDNA FLJ27339 fis, clone TMS09615, highly similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-)

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

ATP + H2O = ADP + phosphate.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HelicaseSAAS annotationImported, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ27339 fis, clone TMS09615, highly similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-)Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PRIDEiQ6ZNQ5.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000375809.

Structurei

3D structure databases

ProteinModelPortaliQ6ZNQ5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains helicase ATP-binding domain.SAAS annotation

Family and domain databases

InterProiIPR006555. ATP-dep_Helicase_C.
IPR013020. DNA_helicase_DNA-repair_Rad3.
IPR010643. DUF1227.
IPR001945. XPGD_DNA_repair.
[Graphical view]
PfamiPF06777. DUF1227. 1 hit.
PF13307. Helicase_C_2. 1 hit.
[Graphical view]
PRINTSiPR00852. XRODRMPGMNTD.
SMARTiSM00491. HELICc2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00604. rad3. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6ZNQ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRQWLFVTCR CTAWGCKFPK QAQCPPSLSA HCLGRQARDR RDGGGRAAGP
60 70 80 90 100
AHASVCPPTP SLLPARFCAE RLRSLLHTLE ITDLADFSPL TLLANFATLV
110 120 130 140 150
STYAKGFTII IEPFDDRTPT IANPILHFSC MDASLAIKPV FERFQSVIIT
160 170 180 190 200
SGTLSPLDIY PKILDFHPVT MATFTMTLAR VCLCPMIIGR GNDQVAISSK
210 220 230 240 250
LETREDIAVI RNYGNLLLEM SAVVPDGIVA FFTSYQYMES TVASWYEQGI
260 270 280 290 300
LENIQRNKLL FIETQDGAET SVALEKYQEA CENGRGAILL SVARGKVSEG
310 320 330 340 350
IDFVHHYGRA VIMFGVPYVY TQSRILKARL EYLRDQFQIR ENDFLTFDAM
360 370 380 390 400
RHAAQCVGRA IRGKTDYGLM VFADKRFARG DKRGKLPRWI QEHLTDANLN
410 420 430 440 450
LTVDEGVQVA KYFLRQMAQP FHREDQLGLS LLSLEQLESE ETLQRIEQIA

QQL
Length:453
Mass (Da):50,971
Last modified:July 5, 2004 - v1
Checksum:i2406B5BD7BA85858
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK130849 mRNA. Translation: BAC85446.1.
UniGeneiHs.487294.

Genome annotation databases

UCSCiuc002pbh.2. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK130849 mRNA. Translation: BAC85446.1.
UniGeneiHs.487294.

3D structure databases

ProteinModelPortaliQ6ZNQ5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000375809.

Proteomic databases

PRIDEiQ6ZNQ5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiuc002pbh.2. human.

Family and domain databases

InterProiIPR006555. ATP-dep_Helicase_C.
IPR013020. DNA_helicase_DNA-repair_Rad3.
IPR010643. DUF1227.
IPR001945. XPGD_DNA_repair.
[Graphical view]
PfamiPF06777. DUF1227. 1 hit.
PF13307. Helicase_C_2. 1 hit.
[Graphical view]
PRINTSiPR00852. XRODRMPGMNTD.
SMARTiSM00491. HELICc2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00604. rad3. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project."
    Kawakami B., Sugiyama A., Takemoto M., Suzuki Y., Hata H., Nakagawa K., Mizuno S., Morinaga M., Kawamura M., Sugiyama T., Irie R., Otsuki T., Sato H., Nishikawa T., Nagai K., Isogai T., Sugano S.
    Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: ThymusImported.

Entry informationi

Entry nameiQ6ZNQ5_HUMAN
AccessioniPrimary (citable) accession number: Q6ZNQ5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: June 24, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.