Q6ZNL6 (FGD5_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 95.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: FYVE, RhoGEF and PH domain-containing protein 5 Alternative name(s): Zinc finger FYVE domain-containing protein 23 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1462 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Activates CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. Mediates VEGF-induced CDC42 activation. May regulate proangiogenic action of VEGF in vascular endothelial cells, including network formation, directional movement and proliferation. May play a role in regulating the actin cytoskeleton and cell shape. Ref.6 |
| Subcellular location | Cytoplasm › cytoskeleton. Cell projection › ruffle membrane. Endoplasmic reticulum. Golgi apparatus. Early endosome. Note: In peripheral membrane ruffles, colocolizes with F-actin. In confluent HUVECs, detected at cell-cell-contact sites where it colocalizes with vascular endothelial cadherin/CDH5. Ref.6 |
| Tissue specificity | Expressed in endothelial cells (at protein level). Ref.6 |
| Sequence similarities | Contains 1 DH (DBL-homology) domain. Contains 1 FYVE-type zinc finger. Contains 2 PH domains. |
| Sequence caution | The sequence BAC04878.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAC04989.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAC85128.1 differs from that shown. Reason: Frameshift at position 79. The sequence CAD98090.1 differs from that shown. Reason: Erroneous termination at position 1279. Translated as Lys. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q6ZNL6-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q6ZNL6-2) The sequence of this isoform differs from the canonical sequence as follows: 1-922: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1462 | 1462 | FYVE, RhoGEF and PH domain-containing protein 5 | PRO_0000080950 | ||||||||||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||||||||||
| Domain | 892 – 1084 | 193 | DH | |||||||||||||||||||||||||||||||||||||||
| Domain | 1113 – 1207 | 95 | PH 1 | |||||||||||||||||||||||||||||||||||||||
| Domain | 1363 – 1461 | 99 | PH 2 | |||||||||||||||||||||||||||||||||||||||
| Zinc finger | 1242 – 1301 | 60 | FYVE-type | |||||||||||||||||||||||||||||||||||||||
| Compositional bias | 58 – 323 | 266 | Glu-rich | |||||||||||||||||||||||||||||||||||||||
| Compositional bias | 645 – 650 | 6 | Poly-Lys | |||||||||||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 632 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||||||||||||||
| Modified residue | 635 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 922 | 922 | Missing in isoform 2. | VSP_013088 | ||||||||||||||||||||||||||||||||||||||
| Natural variant | 403 | 1 | G → R. Corresponds to variant rs7636593 [ dbSNP | Ensembl ]. | VAR_059799 | ||||||||||||||||||||||||||||||||||||||
| Natural variant | 828 | 1 | A → T. Corresponds to variant rs17038795 [ dbSNP | Ensembl ]. | VAR_059800 | ||||||||||||||||||||||||||||||||||||||
| Natural variant | 941 | 1 | E → K. Corresponds to variant rs2307092 [ dbSNP | Ensembl ]. | VAR_059801 | ||||||||||||||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 124 | 1 | A → T in BAC85128. Ref.1 | |||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 213 | 1 | A → G in BAC85128. Ref.1 | |||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 354 | 1 | S → G in CAE45896. Ref.5 | |||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 574 | 1 | H → Y in BAC04989. Ref.1 | |||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1112 | 1 | R → M in CAE45896. Ref.5 | |||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1196 | 1 | D → N in CAE45896. Ref.5 | |||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1289 | 1 | M → T in CAE45896. Ref.5 | |||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1382 | 1 | K → E in BAC04989. Ref.1 | |||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1400 | 1 | D → G in CAD98090. Ref.5 | |||||||||||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||||||||||
| Helix | 891 – 917 | 27 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 919 – 929 | 11 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 936 – 968 | 33 | ||||||||||||||||||||||||||||||||||||||||
| Turn | 969 – 972 | 4 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 978 – 981 | 4 | ||||||||||||||||||||||||||||||||||||||||
| Turn | 982 – 986 | 5 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 987 – 1008 | 22 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 1012 – 1022 | 11 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 1032 – 1054 | 23 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 1062 – 1084 | 23 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 1088 – 1100 | 13 | ||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1114 – 1116 | 3 | ||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1119 – 1124 | 6 | ||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1127 – 1145 | 19 | ||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1151 – 1158 | 8 | ||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1174 – 1179 | 6 | ||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1184 – 1188 | 5 | ||||||||||||||||||||||||||||||||||||||||
| Helix | 1192 – 1204 | 13 | ||||||||||||||||||||||||||||||||||||||||
Sequences
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References
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AK096856 mRNA. Translation: BAC04878.1. Different initiation. AK097276 mRNA. Translation: BAC04989.1. Different initiation. AK131078 mRNA. Translation: BAC85128.1. Frameshift. AK123054 mRNA. Translation: BAG53865.1. AC087591 Genomic DNA. No translation available. AC090954 Genomic DNA. No translation available. BC035364 mRNA. Translation: AAH35364.1. BF989107 mRNA. No translation available. BX640820 Transcribed RNA. Translation: CAE45896.2. BX538312 mRNA. Translation: CAD98090.1. Sequence problems. | ||||||||||||
| IPI | IPI00397955. IPI00554548. | ||||||||||||
| RefSeq | NP_689749.3. NM_152536.3. | ||||||||||||
| UniGene | Hs.412406. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q6ZNL6. | ||||||||||||
| SMR | Q6ZNL6. Positions 890-1205, 1245-1301, 1369-1461. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| STRING | 9606.ENSP00000285046. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q6ZNL6. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 296439343. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q6ZNL6. | ||||||||||||
| PRIDE | Q6ZNL6. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 152273. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000285046; ENSP00000285046; ENSG00000154783. | ||||||||||||
| GeneID | 152273. | ||||||||||||
| KEGG | hsa:152273. | ||||||||||||
| UCSC | uc003bzc.3. human. uc003bzd.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 152273. | ||||||||||||
| GeneCards | GC03P014860. | ||||||||||||
| H-InvDB | HIX0003091. HIX0003092. | ||||||||||||
| HGNC | HGNC:19117. FGD5. | ||||||||||||
| HPA | HPA014536. HPA019191. | ||||||||||||
| MIM | 614788. gene. | ||||||||||||
| neXtProt | NX_Q6ZNL6. | ||||||||||||
| PharmGKB | PA134874843. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG291216. | ||||||||||||
| HOGENOM | HOG000168874. | ||||||||||||
| HOVERGEN | HBG051609. | ||||||||||||
| InParanoid | Q6ZNL6. | ||||||||||||
| KO | K05724. | ||||||||||||
| OMA | YVEMLQH. | ||||||||||||
| OrthoDB | EOG4M65HM. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q6ZNL6. | ||||||||||||
| Bgee | Q6ZNL6. | ||||||||||||
| CleanEx | HS_FGD5. | ||||||||||||
| Genevestigator | Q6ZNL6. | ||||||||||||
| GermOnline | ENSG00000154783. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 1.20.900.10. 1 hit. 2.30.29.30. 2 hits. 3.30.40.10. 1 hit. | ||||||||||||
| InterPro | IPR000219. DH-domain. IPR011993. PH_like_dom. IPR001849. Pleckstrin_homology. IPR000306. Znf_FYVE. IPR017455. Znf_FYVE-rel. IPR013083. Znf_RING/FYVE/PHD. [Graphical view] | ||||||||||||
| Pfam | PF01363. FYVE. 1 hit. PF00169. PH. 2 hits. PF00621. RhoGEF. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00064. FYVE. 1 hit. SM00233. PH. 2 hits. SM00325. RhoGEF. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF48065. DH-domain. 1 hit. | ||||||||||||
| PROSITE | PS50010. DH_2. 1 hit. PS50003. PH_DOMAIN. 2 hits. PS50178. ZF_FYVE. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| EvolutionaryTrace | Q6ZNL6. | ||||||||||||
| GenomeRNAi | 152273. | ||||||||||||
| NextBio | 86934. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | FGD5_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q6ZNL6 Secondary accession number(s): B3KVQ3 Q8N8G4 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
