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Q6ZLB8

- Q6ZLB8_ORYSJ

UniProt

Q6ZLB8 - Q6ZLB8_ORYSJ

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Protein
Submitted name:

Putative 60S ribosomal protein L4/L1

Gene

OJ1014_E09.28

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiREACT_208864. SRP-dependent cotranslational protein targeting to membrane.
REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_244456. Peptide chain elongation.
REACT_250244. Formation of a pool of free 40S subunits.
REACT_254990. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_257481. Eukaryotic Translation Termination.
REACT_263728. L13a-mediated translational silencing of Ceruloplasmin expression.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative 60S ribosomal protein L4/L1Imported
Submitted name:
cDNA clone:001-031-B02, full insert sequenceImported
Submitted name:
cDNA clone:006-202-A09, full insert sequenceImported
Submitted name:
cDNA clone:006-211-B12, full insert sequenceImported
Submitted name:
cDNA clone:006-302-F06, full insert sequenceImported
Submitted name:
cDNA clone:006-310-C02, full insert sequenceImported
Gene namesi
Name:OJ1014_E09.28Imported
ORF Names:OsJ_23326Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 7

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J61electron microscopy5.50C1-405[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

OMAiVASNENK.

Family and domain databases

Gene3Di3.40.1370.10. 1 hit.
InterProiIPR025755. Ribos_L4_C_dom.
IPR002136. Ribosomal_L4/L1e.
IPR013000. Ribosomal_L4/L1e_euk/arc_CS.
IPR023574. Ribosomal_L4_dom.
[Graphical view]
PfamiPF14374. Ribos_L4_asso_C. 1 hit.
PF00573. Ribosomal_L4. 1 hit.
[Graphical view]
SUPFAMiSSF52166. SSF52166. 1 hit.
PROSITEiPS00939. RIBOSOMAL_L1E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6ZLB8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATQTRPLVS VKALEGDMAT DNSSSLALAE VFRAPLRPDV VRFVHRLLSC
60 70 80 90 100
NKRQPYAVSR RAGHQTSAES WGTGRAVSRI PRVPGGGTHR AGQGAFGNMC
110 120 130 140 150
RGGRMFAPTK TWRKWHRRVN VHLRRVAVAS ALAATSVPSL VLARGHRIET
160 170 180 190 200
VPELPLVISD SAESIEKTSQ AIKILKQVGA YADAEKAKDS VGIRPGKGKM
210 220 230 240 250
RNRRYINRKG PLIVYGTEGS KIVKAFRNLP GVDVANVERL NLLDLAPGGH
260 270 280 290 300
LGRFVIWTES AFKKLEEVYG TFEAPSLKKK GFILPRPKMA NADLGRIINS
310 320 330 340 350
DEVQSVVKPL NKEVKRREKR KNPLKNVAAV LKLNPYFGTA RKMATLAEAA
360 370 380 390 400
RIKARKEKLD SKRTKLSPEE AAKVKAAGKA WYKTMISDSD YAEFDNFSKW

LGVTQ
Length:405
Mass (Da):44,739
Last modified:July 5, 2004 - v1
Checksum:i2C1C930183EE240D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003800 Genomic DNA. Translation: BAC83047.1.
AK060711 mRNA. Translation: BAG87548.1.
AK060963 mRNA. Translation: BAG87643.1.
AK104447 mRNA. Translation: BAG96691.1.
AK104504 mRNA. Translation: BAG96737.1.
AK104629 mRNA. Translation: BAG96846.1.
CM000144 Genomic DNA. Translation: EAZ38906.1.

Genome annotation databases

EnsemblPlantsiOS07T0180900-01; OS07T0180900-01; OS07G0180900.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003800 Genomic DNA. Translation: BAC83047.1 .
AK060711 mRNA. Translation: BAG87548.1 .
AK060963 mRNA. Translation: BAG87643.1 .
AK104447 mRNA. Translation: BAG96691.1 .
AK104504 mRNA. Translation: BAG96737.1 .
AK104629 mRNA. Translation: BAG96846.1 .
CM000144 Genomic DNA. Translation: EAZ38906.1 .

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3J61 electron microscopy 5.50 C 1-405 [» ]
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS07T0180900-01 ; OS07T0180900-01 ; OS07G0180900 .

Phylogenomic databases

OMAi VASNENK.

Enzyme and pathway databases

Reactomei REACT_208864. SRP-dependent cotranslational protein targeting to membrane.
REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_244456. Peptide chain elongation.
REACT_250244. Formation of a pool of free 40S subunits.
REACT_254990. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_257481. Eukaryotic Translation Termination.
REACT_263728. L13a-mediated translational silencing of Ceruloplasmin expression.

Family and domain databases

Gene3Di 3.40.1370.10. 1 hit.
InterProi IPR025755. Ribos_L4_C_dom.
IPR002136. Ribosomal_L4/L1e.
IPR013000. Ribosomal_L4/L1e_euk/arc_CS.
IPR023574. Ribosomal_L4_dom.
[Graphical view ]
Pfami PF14374. Ribos_L4_asso_C. 1 hit.
PF00573. Ribosomal_L4. 1 hit.
[Graphical view ]
SUPFAMi SSF52166. SSF52166. 1 hit.
PROSITEi PS00939. RIBOSOMAL_L1E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC clone:OJ1014_E09."
    Sasaki T., Matsumoto T., Yamamoto K.
    Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice."
    Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K.
    , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y.
    Science 301:376-379(2003)
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  5. "Improved gene annotation of the rice (Oryza sativa) genomes."
    Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. NipponbareImported.
  7. Cited for: NUCLEOTIDE SEQUENCE.
  8. "Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion."
    Gogala M., Becker T., Beatrix B., Armache J.P., Barrio-Garcia C., Berninghausen O., Beckmann R.
    Nature 506:107-110(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.50 ANGSTROMS).

Entry informationi

Entry nameiQ6ZLB8_ORYSJ
AccessioniPrimary (citable) accession number: Q6ZLB8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: November 26, 2014
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3