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Q6ZLB8

- Q6ZLB8_ORYSJ

UniProt

Q6ZLB8 - Q6ZLB8_ORYSJ

Protein
Submitted name:

Putative 60S ribosomal protein L4/L1

Gene

OJ1014_E09.28

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinImported

    Enzyme and pathway databases

    ReactomeiREACT_208864. SRP-dependent cotranslational protein targeting to membrane.
    REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative 60S ribosomal protein L4/L1Imported
    Submitted name:
    cDNA clone:001-031-B02, full insert sequenceImported
    Submitted name:
    cDNA clone:006-202-A09, full insert sequenceImported
    Submitted name:
    cDNA clone:006-211-B12, full insert sequenceImported
    Submitted name:
    cDNA clone:006-302-F06, full insert sequenceImported
    Submitted name:
    cDNA clone:006-310-C02, full insert sequenceImported
    Gene namesi
    Name:OJ1014_E09.28Imported
    ORF Names:OsJ_23326Imported
    OrganismiOryza sativa subsp. japonica (Rice)Imported
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 7

    Subcellular locationi

    GO - Cellular componenti

    1. cell wall Source: EnsemblPlants/Gramene
    2. chloroplast Source: EnsemblPlants/Gramene
    3. cytosolic large ribosomal subunit Source: EnsemblPlants/Gramene
    4. nucleolus Source: EnsemblPlants/Gramene
    5. plasma membrane Source: EnsemblPlants/Gramene
    6. plasmodesma Source: EnsemblPlants/Gramene
    7. vacuolar membrane Source: EnsemblPlants/Gramene

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3J61electron microscopy5.50C1-405[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    OMAiVASNENK.

    Family and domain databases

    Gene3Di3.40.1370.10. 1 hit.
    InterProiIPR025755. Ribos_L4_C_dom.
    IPR002136. Ribosomal_L4/L1e.
    IPR013000. Ribosomal_L4/L1e_euk/arc_CS.
    IPR023574. Ribosomal_L4_dom.
    [Graphical view]
    PfamiPF14374. Ribos_L4_asso_C. 1 hit.
    PF00573. Ribosomal_L4. 1 hit.
    [Graphical view]
    SUPFAMiSSF52166. SSF52166. 1 hit.
    PROSITEiPS00939. RIBOSOMAL_L1E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6ZLB8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATQTRPLVS VKALEGDMAT DNSSSLALAE VFRAPLRPDV VRFVHRLLSC    50
    NKRQPYAVSR RAGHQTSAES WGTGRAVSRI PRVPGGGTHR AGQGAFGNMC 100
    RGGRMFAPTK TWRKWHRRVN VHLRRVAVAS ALAATSVPSL VLARGHRIET 150
    VPELPLVISD SAESIEKTSQ AIKILKQVGA YADAEKAKDS VGIRPGKGKM 200
    RNRRYINRKG PLIVYGTEGS KIVKAFRNLP GVDVANVERL NLLDLAPGGH 250
    LGRFVIWTES AFKKLEEVYG TFEAPSLKKK GFILPRPKMA NADLGRIINS 300
    DEVQSVVKPL NKEVKRREKR KNPLKNVAAV LKLNPYFGTA RKMATLAEAA 350
    RIKARKEKLD SKRTKLSPEE AAKVKAAGKA WYKTMISDSD YAEFDNFSKW 400
    LGVTQ 405
    Length:405
    Mass (Da):44,739
    Last modified:July 5, 2004 - v1
    Checksum:i2C1C930183EE240D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003800 Genomic DNA. Translation: BAC83047.1.
    AK060711 mRNA. Translation: BAG87548.1.
    AK060963 mRNA. Translation: BAG87643.1.
    AK104447 mRNA. Translation: BAG96691.1.
    AK104504 mRNA. Translation: BAG96737.1.
    AK104629 mRNA. Translation: BAG96846.1.
    CM000144 Genomic DNA. Translation: EAZ38906.1.

    Genome annotation databases

    EnsemblPlantsiOS07T0180900-01; OS07T0180900-01; OS07G0180900.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003800 Genomic DNA. Translation: BAC83047.1 .
    AK060711 mRNA. Translation: BAG87548.1 .
    AK060963 mRNA. Translation: BAG87643.1 .
    AK104447 mRNA. Translation: BAG96691.1 .
    AK104504 mRNA. Translation: BAG96737.1 .
    AK104629 mRNA. Translation: BAG96846.1 .
    CM000144 Genomic DNA. Translation: EAZ38906.1 .

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3J61 electron microscopy 5.50 C 1-405 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS07T0180900-01 ; OS07T0180900-01 ; OS07G0180900 .

    Phylogenomic databases

    OMAi VASNENK.

    Enzyme and pathway databases

    Reactomei REACT_208864. SRP-dependent cotranslational protein targeting to membrane.
    REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Family and domain databases

    Gene3Di 3.40.1370.10. 1 hit.
    InterProi IPR025755. Ribos_L4_C_dom.
    IPR002136. Ribosomal_L4/L1e.
    IPR013000. Ribosomal_L4/L1e_euk/arc_CS.
    IPR023574. Ribosomal_L4_dom.
    [Graphical view ]
    Pfami PF14374. Ribos_L4_asso_C. 1 hit.
    PF00573. Ribosomal_L4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52166. SSF52166. 1 hit.
    PROSITEi PS00939. RIBOSOMAL_L1E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC clone:OJ1014_E09."
      Sasaki T., Matsumoto T., Yamamoto K.
      Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice."
      Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K.
      , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y.
      Science 301:376-379(2003)
      Cited for: NUCLEOTIDE SEQUENCE.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NipponbareImported.
    4. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NipponbareImported.
    5. "Improved gene annotation of the rice (Oryza sativa) genomes."
      Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
      Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    6. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. NipponbareImported.
    7. Cited for: NUCLEOTIDE SEQUENCE.
    8. "Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion."
      Gogala M., Becker T., Beatrix B., Armache J.P., Barrio-Garcia C., Berninghausen O., Beckmann R.
      Nature 506:107-110(2014) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.50 ANGSTROMS).

    Entry informationi

    Entry nameiQ6ZLB8_ORYSJ
    AccessioniPrimary (citable) accession number: Q6ZLB8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2004
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3