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Q6Z8C8 (CDKF4_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Cyclin-dependent kinase F-4

Short name=CDKF;4
EC=2.7.11.22
EC=2.7.11.23
Alternative name(s):
Serine/threonine-protein kinase MHK-like protein 2
Gene names
Name:CDKF-4
Ordered Locus Names:Os02g0700600, LOC_Os02g47220
ORF Names:OJ1111_E07.13-1, P0459B01.42-1
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length459 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

Sequence similarities

Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.

Contains 1 protein kinase domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 459459Cyclin-dependent kinase F-4
PRO_0000296109

Regions

Domain4 – 283280Protein kinase
Nucleotide binding10 – 189ATP By similarity

Sites

Active site1251Proton acceptor By similarity
Binding site331ATP By similarity

Amino acid modifications

Modified residue1511Phosphoserine By similarity
Modified residue1561Phosphothreonine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q6Z8C8 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: B527ED78C8B15E1F

FASTA45951,720
        10         20         30         40         50         60 
MDRFKMIKEV GDGTFGSVWR AINKQNGEVV AVKKMKRKYY SFEECMSLRE VKSLRRMNHP 

        70         80         90        100        110        120 
NIVKLKEVIR ENDILYFIME YMECNLYQLM KDRVKPFSEA EVRNWCFQIF QALAYMHQRG 

       130        140        150        160        170        180 
YFHRDLKPEN LLVSKDVIKL ADFGLAREVT SVPPYTEYVS TRWYRAPEVL LQSSIYDSAV 

       190        200        210        220        230        240 
DMWAMGAIMA ELLTLHPLFP GTSEADEILK ICNVIGSPDE QSWPQGLSLA ETMKFQFPQV 

       250        260        270        280        290        300 
SGNQLAEVMT SVSSEAVDLI SSLCSWDPCK RPKAAEVLQH TFFQGCTFVP PTVRSKAGVL 

       310        320        330        340        350        360 
PKTPPCVGVK GVSEHGMPRR YSTGTLSTTK PHSNASLKSS GLSKTGVQRK LQMDRQAPQK 

       370        380        390        400        410        420 
IKKPTESNNK LTTNRVPARN SPGHPVLRHS RSLPETGRAT MHKVSTLTER LTHMSVTSRT 

       430        440        450 
RTTPKPAAPL LKAGLGKSDL LGKTDEIPPA KRLTRKLVS 

« Hide

References

« Hide 'large scale' references
[1]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[3]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.
[4]"Genome-wide identification and expression analysis of rice cell cycle genes."
Guo J., Song J., Wang F., Zhang X.S.
Plant Mol. Biol. 64:349-360(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP003994 Genomic DNA. Translation: BAD07520.1.
AP004778 Genomic DNA. Translation: BAD07891.1.
AP008208 Genomic DNA. Translation: BAF09755.1.
AK100056 mRNA. No translation available.
RefSeqNP_001047841.1. NM_001054376.1.
UniGeneOs.12650.

3D structure databases

ProteinModelPortalQ6Z8C8.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ6Z8C8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS02T0700600-01; OS02T0700600-01; OS02G0700600.
GeneID4330434.
KEGGosa:4330434.

Organism-specific databases

GrameneQ6Z8C8.

Phylogenomic databases

eggNOGCOG0515.
HOGENOMHOG000233024.
OMASEADEIH.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR002290. Ser/Thr_dual-sp_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMSSF56112. SSF56112. 1 hit.
PROSITEPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCDKF4_ORYSJ
AccessionPrimary (citable) accession number: Q6Z8C8
Entry history
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: July 5, 2004
Last modified: May 14, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations