Reviewed, UniProtKB/Swiss-Prot Q6Z3L4 (WOX10_ORYSJ)

Names and origin

Protein names

Recommended name:
    WUSCHEL-related homeobox 10
Alternative name(s):
    OsWOX10
    Protein WOX11/12

Gene names

Name:	WOX10
Ordered Locus Names:	Os08g0242400, LOC_Os08g14400
ORF Names:	OSJNBa0087F21.36, OsJ_025487

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	284 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Transcription factor which may be involved in developmental processes By similarity.
Subcellular location	NucleusBy similarity.
Sequence similarities	Belongs to the WUS homeobox family. Contains 1 homeobox DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Domain	Homeobox
Ligand	DNA-binding
Molecular function	Developmental protein
Gene Ontology (GO)
Biological process	multicellular organismal development Inferred from electronic annotation. Source: UniProtKB-KW regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 284	284	WUSCHEL-related homeobox 10		PRO_0000308647
Regions
	DNA binding	39 – 103	65	Homeobox; WUS-type
Experimental info
	Sequence conflict	64	1	N → S in AK107305. Ref.4
	Sequence conflict	64	1	N → S in CAJ84146. Ref.5

Sequences

	Sequence		Length	Mass (Da)
	Q6Z3L4-1 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 4C6F55691B6979E9	FASTA	284	30,272
	10 20 30 40 50 60 MDRTATASWE VMSRRGEQQQ QLMMQAPASH NGGSGGGEPA RSRWAPKPEQ ILILESIFNS 70 80 90 100 110 120 GMVNPAKDET ARIRRLLERF GAVRDANVFY WFQNRRSRSR RRARQLQQAC GAALHQLPSA 130 140 150 160 170 180 AAAAGAGGGG DYYHHHHQPS SSPFLMHGGG GGGVVTSTTA APAVAASGHF LADEVDGGGD 190 200 210 220 230 240 DDLFAISRQM GLMARHGGGD HHYSSYADSD ATQLSYQPTG TIQVFINGVA YDVPSGGALD 250 260 270 280 MAGTFGRDAM LVHSSGEVLP VDEHGVLINS LQMGECYYLV SKSI

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[3]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed: 15685292] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[4]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[5]	"The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution." Nardmann J., Werr W. Mol. Biol. Evol. 23:2492-2504(2006) [PubMed: 16987950] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 39-103.
[6]	"A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development." Dai M., Hu Y., Zhao Y., Liu H., Zhou D.-X. Plant Physiol. 144:380-390(2007) [PubMed: 17351053] [Abstract] Cited for: NOMENCLATURE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP005249 Genomic DNA. Translation: BAD05582.1. AP008214 Genomic DNA. Translation: BAF23255.1. CM000145 Genomic DNA. Translation: EAZ42004.1. AK107305 mRNA. No translation available. AM234754 mRNA. Translation: CAJ84146.1.
RefSeq	NP_001061341.1.
UniGene	Os.55010
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4345042.
KEGG	osa:4345042.
Organism-specific databases
Gramene	Q6Z3L4.
Family and domain databases
InterPro	IPR001356. Homeobox. [Graphical view]
Pfam	PF00046. Homeobox. 1 hit. [Graphical view]
SMART	SM00389. HOX. 1 hit. [Graphical view]
PROSITE	PS00027. HOMEOBOX_1. False negative. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

WOX10_ORYSJ

Accession

Primary (citable) accession number: Q6Z3L4
Secondary accession number(s): A0AAT5

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 23, 2007
Last sequence update:	July 5, 2004
Last modified:	November 25, 2008
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)