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Q6Z382

- COPG2_ORYSJ

UniProt

Q6Z382 - COPG2_ORYSJ

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Protein
Coatomer subunit gamma-2
Gene
Os07g0201100, LOC_Os07g10150, P0519E02.25
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins By similarity.

GO - Molecular functioni

  1. structural molecule activity Source: InterPro

GO - Biological processi

  1. intracellular protein transport Source: InterPro
  2. vesicle-mediated transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

ER-Golgi transport, Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Coatomer subunit gamma-2
Alternative name(s):
Gamma-2-coat protein
Short name:
Gamma-2-COP
Gene namesi
Ordered Locus Names:Os07g0201100, LOC_Os07g10150
ORF Names:P0519E02.25
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 7

Organism-specific databases

GrameneiQ6Z382.

Subcellular locationi

Cytoplasm By similarity. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side By similarity. Cytoplasmic vesicleCOPI-coated vesicle membrane; Peripheral membrane protein; Cytoplasmic side By similarity
Note: The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it By similarity.

GO - Cellular componenti

  1. COPI vesicle coat Source: InterPro
  2. chloroplast Source: EnsemblPlants/Gramene
  3. cytosol Source: EnsemblPlants/Gramene
  4. plasma membrane Source: EnsemblPlants/Gramene
  5. plasmodesma Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoplasmic vesicle, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 889889Coatomer subunit gamma-2
PRO_0000285629Add
BLAST

Proteomic databases

PRIDEiQ6Z382.

Interactioni

Subunit structurei

Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits By similarity.

Structurei

3D structure databases

ProteinModelPortaliQ6Z382.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati67 – 10236HEAT 1
Add
BLAST
Repeati103 – 14038HEAT 2
Add
BLAST
Repeati289 – 32638HEAT 3
Add
BLAST
Repeati328 – 36033HEAT 4
Add
BLAST
Repeati361 – 39838HEAT 5
Add
BLAST

Sequence similaritiesi

Belongs to the COPG family.
Contains 5 HEAT repeats.

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG5240.
HOGENOMiHOG000184434.
KOiK17267.
OMAiIKHTFAN.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
2.60.40.1480. 1 hit.
3.30.310.30. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR002553. Clathrin/coatomer_adapt-like_N.
IPR015873. Clathrin_a/coatomer_app_sub_C.
IPR009028. Coatomer/calthrin_app_sub_C.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR017106. Coatomer_gsu.
IPR013040. Coatomer_gsu_app_Ig-like-sub.
[Graphical view]
PANTHERiPTHR10261. PTHR10261. 1 hit.
PfamiPF01602. Adaptin_N. 1 hit.
PF08752. COP-gamma_platf. 1 hit.
[Graphical view]
PIRSFiPIRSF037093. Coatomer_gamma_subunit. 1 hit.
SUPFAMiSSF48371. SSF48371. 1 hit.
SSF49348. SSF49348. 1 hit.
SSF55711. SSF55711. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6Z382-1 [UniParc]FASTAAdd to Basket

« Hide

MAQPLVVKKD DDLDEEEYYS PFLGIEKGAV LQEARVFHDP QLDARRCCQV    50
ITKLLYLLNQ GDTFTKVEAT EVFFATTKLF QSKDAGLRRM VYLMIKELSP 100
SADEVIIVTS SLMKDMNSKT DMYRANAIRV LCRIIDSTLL TQIERYLKQA 150
IVDKNPVVAS AALVSGIYLL QTSPEVVKRW SNEVQEAVQS RAALVQFHAL 200
ALLHQIRQND RLAVSKLVTS LTRGSVRSPL AQCLLIRYTS QVIRESSMNS 250
QGGDRPFFDF LESCLRNKAE MVILEAARAI TELNGVTSRE LTPAITVLQL 300
FLSSSKPVLR FAAVRTLNKV ASTHPLAVTN CNIDMESLIS DQNRSIATLA 350
ITTLLKTGNE SSVDRLMKQM TNFMSDIADE FKIVVVEAIR SLCLKFPLKY 400
RSLMNFLSNI LREEGGFEYK KAIVDSIIIL IRDIPDAKES GLFHLCEFIE 450
DCEFTYMSTQ ILHFLGNEGP KTSDPSKYIR YIYNRVILEN ATVRASAVST 500
LAKFGALVDS LKPRIFVLLR RCLFDGDDEV RDRATLYLKL LGGEATVGET 550
EKDVNEFLFG SFDIPLVNLE TSLQNYEPSE APFDISSVSL ETKSQPLAEK 600
KTTGKKPTGP ASALSGPVPT VDASYEKLLS SIPEFAGFGK LFKSSAPVEL 650
TEAETEYSVN VVKHIYDGHV VLQYNCTNTI PEQLLEEVVV FVDASEADEF 700
SEVATKSLRS LPYDSPGQTF VAFEKLEGVL ATGKFSNILK FIVKEVDPST 750
GEADDDGVED EYQLEDLEIT SADYMLKVGV SNFRNAWESM DPESERVDEY 800
GLGARESLAE AVSAVIGILG MQPCEGTDVV PSNSRSHTCL LSGVFIGNVK 850
VLVRLSFGLS GPKEVAMKLA VRSDDPEISD KIHEIVANG 889
Length:889
Mass (Da):98,554
Last modified:July 5, 2004 - v1
Checksum:i5B5FE7A1C4228BF6
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti761 – 7611E → K in AK100095. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP005259 Genomic DNA. Translation: BAC84213.1.
AP008213 Genomic DNA. Translation: BAF21045.1.
AK100095 mRNA. No translation available.
RefSeqiNP_001059131.1. NM_001065666.1.
UniGeneiOs.7984.

Genome annotation databases

EnsemblPlantsiOS07T0201100-01; OS07T0201100-01; OS07G0201100.
GeneIDi4342665.
KEGGiosa:4342665.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP005259 Genomic DNA. Translation: BAC84213.1 .
AP008213 Genomic DNA. Translation: BAF21045.1 .
AK100095 mRNA. No translation available.
RefSeqi NP_001059131.1. NM_001065666.1.
UniGenei Os.7984.

3D structure databases

ProteinModelPortali Q6Z382.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q6Z382.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS07T0201100-01 ; OS07T0201100-01 ; OS07G0201100 .
GeneIDi 4342665.
KEGGi osa:4342665.

Organism-specific databases

Gramenei Q6Z382.

Phylogenomic databases

eggNOGi COG5240.
HOGENOMi HOG000184434.
KOi K17267.
OMAi IKHTFAN.

Family and domain databases

Gene3Di 1.25.10.10. 1 hit.
2.60.40.1480. 1 hit.
3.30.310.30. 1 hit.
InterProi IPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR002553. Clathrin/coatomer_adapt-like_N.
IPR015873. Clathrin_a/coatomer_app_sub_C.
IPR009028. Coatomer/calthrin_app_sub_C.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR017106. Coatomer_gsu.
IPR013040. Coatomer_gsu_app_Ig-like-sub.
[Graphical view ]
PANTHERi PTHR10261. PTHR10261. 1 hit.
Pfami PF01602. Adaptin_N. 1 hit.
PF08752. COP-gamma_platf. 1 hit.
[Graphical view ]
PIRSFi PIRSF037093. Coatomer_gamma_subunit. 1 hit.
SUPFAMi SSF48371. SSF48371. 1 hit.
SSF49348. SSF49348. 1 hit.
SSF55711. SSF55711. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiCOPG2_ORYSJ
AccessioniPrimary (citable) accession number: Q6Z382
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: July 5, 2004
Last modified: May 14, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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