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Protein

Coatomer subunit gamma-2

Gene

Os07g0201100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processER-Golgi transport, Protein transport, Transport

Enzyme and pathway databases

ReactomeiR-OSA-6807878 COPI-mediated anterograde transport
R-OSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic

Names & Taxonomyi

Protein namesi
Recommended name:
Coatomer subunit gamma-2
Alternative name(s):
Gamma-2-coat protein
Short name:
Gamma-2-COP
Gene namesi
Ordered Locus Names:Os07g0201100, LOC_Os07g10150
ORF Names:OsJ_23473Imported, P0519E02.25
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoplasmic vesicle, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002856291 – 889Coatomer subunit gamma-2Add BLAST889

Proteomic databases

PaxDbiQ6Z382
PRIDEiQ6Z382

Expressioni

Gene expression databases

ExpressionAtlasiQ6Z382 differential
GenevisibleiQ6Z382 OS

Interactioni

Subunit structurei

Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits.By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os07g10150.1

Structurei

3D structure databases

ProteinModelPortaliQ6Z382
SMRiQ6Z382
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati67 – 102HEAT 1Add BLAST36
Repeati103 – 140HEAT 2Add BLAST38
Repeati289 – 326HEAT 3Add BLAST38
Repeati328 – 360HEAT 4Add BLAST33
Repeati361 – 398HEAT 5Add BLAST38

Sequence similaritiesi

Belongs to the COPG family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG1078 Eukaryota
COG5240 LUCA
HOGENOMiHOG000184434
InParanoidiQ6Z382
KOiK17267
OMAiKSEMVNF
OrthoDBiEOG093601RJ

Family and domain databases

Gene3Di1.25.10.10, 1 hit
2.60.40.1480, 1 hit
3.30.310.10, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR002553 Clathrin/coatomer_adapt-like_N
IPR013041 Clathrin_app_Ig-like_sf
IPR009028 Coatomer/calthrin_app_sub_C
IPR032154 Coatomer_g_Cpla
IPR017106 Coatomer_gsu
IPR013040 Coatomer_gsu_app_Ig-like_dom
IPR037067 Coatomer_gsu_app_sf
IPR012295 TBP_dom_sf
PANTHERiPTHR10261 PTHR10261, 1 hit
PfamiView protein in Pfam
PF01602 Adaptin_N, 1 hit
PF16381 Coatomer_g_Cpla, 1 hit
PF08752 COP-gamma_platf, 1 hit
PIRSFiPIRSF037093 Coatomer_gamma_subunit, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
SSF49348 SSF49348, 1 hit
SSF55711 SSF55711, 1 hit

Sequencei

Sequence statusi: Complete.

Q6Z382-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQPLVVKKD DDLDEEEYYS PFLGIEKGAV LQEARVFHDP QLDARRCCQV
60 70 80 90 100
ITKLLYLLNQ GDTFTKVEAT EVFFATTKLF QSKDAGLRRM VYLMIKELSP
110 120 130 140 150
SADEVIIVTS SLMKDMNSKT DMYRANAIRV LCRIIDSTLL TQIERYLKQA
160 170 180 190 200
IVDKNPVVAS AALVSGIYLL QTSPEVVKRW SNEVQEAVQS RAALVQFHAL
210 220 230 240 250
ALLHQIRQND RLAVSKLVTS LTRGSVRSPL AQCLLIRYTS QVIRESSMNS
260 270 280 290 300
QGGDRPFFDF LESCLRNKAE MVILEAARAI TELNGVTSRE LTPAITVLQL
310 320 330 340 350
FLSSSKPVLR FAAVRTLNKV ASTHPLAVTN CNIDMESLIS DQNRSIATLA
360 370 380 390 400
ITTLLKTGNE SSVDRLMKQM TNFMSDIADE FKIVVVEAIR SLCLKFPLKY
410 420 430 440 450
RSLMNFLSNI LREEGGFEYK KAIVDSIIIL IRDIPDAKES GLFHLCEFIE
460 470 480 490 500
DCEFTYMSTQ ILHFLGNEGP KTSDPSKYIR YIYNRVILEN ATVRASAVST
510 520 530 540 550
LAKFGALVDS LKPRIFVLLR RCLFDGDDEV RDRATLYLKL LGGEATVGET
560 570 580 590 600
EKDVNEFLFG SFDIPLVNLE TSLQNYEPSE APFDISSVSL ETKSQPLAEK
610 620 630 640 650
KTTGKKPTGP ASALSGPVPT VDASYEKLLS SIPEFAGFGK LFKSSAPVEL
660 670 680 690 700
TEAETEYSVN VVKHIYDGHV VLQYNCTNTI PEQLLEEVVV FVDASEADEF
710 720 730 740 750
SEVATKSLRS LPYDSPGQTF VAFEKLEGVL ATGKFSNILK FIVKEVDPST
760 770 780 790 800
GEADDDGVED EYQLEDLEIT SADYMLKVGV SNFRNAWESM DPESERVDEY
810 820 830 840 850
GLGARESLAE AVSAVIGILG MQPCEGTDVV PSNSRSHTCL LSGVFIGNVK
860 870 880
VLVRLSFGLS GPKEVAMKLA VRSDDPEISD KIHEIVANG
Length:889
Mass (Da):98,554
Last modified:July 5, 2004 - v1
Checksum:i5B5FE7A1C4228BF6
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti761E → K in AK100095 (PubMed:12869764).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005259 Genomic DNA Translation: BAC84213.1
AP008213 Genomic DNA Translation: BAF21045.1
AP014963 Genomic DNA Translation: BAT00500.1
CM000144 Genomic DNA Translation: EEE66759.1
AK100095 mRNA No translation available.
RefSeqiXP_015647270.1, XM_015791784.1
UniGeneiOs.7984

Genome annotation databases

EnsemblPlantsiOs07t0201100-01; Os07t0201100-01; Os07g0201100
GeneIDi4342665
GrameneiOs07t0201100-01; Os07t0201100-01; Os07g0201100
KEGGiosa:4342665

Similar proteinsi

Entry informationi

Entry nameiCOPG2_ORYSJ
AccessioniPrimary (citable) accession number: Q6Z382
Secondary accession number(s): B9FW22
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: July 5, 2004
Last modified: May 23, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

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