Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q6Z382

- COPG2_ORYSJ

UniProt

Q6Z382 - COPG2_ORYSJ

Protein

Coatomer subunit gamma-2

Gene

Os07g0201100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins By similarity.By similarity

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    GO - Biological processi

    1. intracellular protein transport Source: InterPro
    2. vesicle-mediated transport Source: UniProtKB-KW

    Keywords - Biological processi

    ER-Golgi transport, Protein transport, Transport

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Coatomer subunit gamma-2
    Alternative name(s):
    Gamma-2-coat protein
    Short name:
    Gamma-2-COP
    Gene namesi
    Ordered Locus Names:Os07g0201100, LOC_Os07g10150
    ORF Names:P0519E02.25
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 7

    Organism-specific databases

    GrameneiQ6Z382.

    Subcellular locationi

    Cytoplasm By similarity. Golgi apparatus membrane By similarity; Peripheral membrane protein By similarity; Cytoplasmic side By similarity. Cytoplasmic vesicleCOPI-coated vesicle membrane By similarity; Peripheral membrane protein By similarity; Cytoplasmic side By similarity
    Note: The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it.By similarity

    GO - Cellular componenti

    1. chloroplast Source: EnsemblPlants/Gramene
    2. COPI vesicle coat Source: InterPro
    3. cytosol Source: EnsemblPlants/Gramene
    4. plasma membrane Source: EnsemblPlants/Gramene
    5. plasmodesma Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    Cytoplasm, Cytoplasmic vesicle, Golgi apparatus, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 889889Coatomer subunit gamma-2PRO_0000285629Add
    BLAST

    Proteomic databases

    PRIDEiQ6Z382.

    Interactioni

    Subunit structurei

    Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ6Z382.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati67 – 10236HEAT 1Add
    BLAST
    Repeati103 – 14038HEAT 2Add
    BLAST
    Repeati289 – 32638HEAT 3Add
    BLAST
    Repeati328 – 36033HEAT 4Add
    BLAST
    Repeati361 – 39838HEAT 5Add
    BLAST

    Sequence similaritiesi

    Belongs to the COPG family.Curated
    Contains 5 HEAT repeats.Curated

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiCOG5240.
    HOGENOMiHOG000184434.
    KOiK17267.
    OMAiIKHTFAN.

    Family and domain databases

    Gene3Di1.25.10.10. 1 hit.
    2.60.40.1480. 1 hit.
    3.30.310.30. 1 hit.
    InterProiIPR011989. ARM-like.
    IPR016024. ARM-type_fold.
    IPR002553. Clathrin/coatomer_adapt-like_N.
    IPR015873. Clathrin_a/coatomer_app_sub_C.
    IPR009028. Coatomer/calthrin_app_sub_C.
    IPR013041. Coatomer/clathrin_app_Ig-like.
    IPR017106. Coatomer_gsu.
    IPR013040. Coatomer_gsu_app_Ig-like-sub.
    [Graphical view]
    PANTHERiPTHR10261. PTHR10261. 1 hit.
    PfamiPF01602. Adaptin_N. 1 hit.
    PF08752. COP-gamma_platf. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037093. Coatomer_gamma_subunit. 1 hit.
    SUPFAMiSSF48371. SSF48371. 1 hit.
    SSF49348. SSF49348. 1 hit.
    SSF55711. SSF55711. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q6Z382-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAQPLVVKKD DDLDEEEYYS PFLGIEKGAV LQEARVFHDP QLDARRCCQV    50
    ITKLLYLLNQ GDTFTKVEAT EVFFATTKLF QSKDAGLRRM VYLMIKELSP 100
    SADEVIIVTS SLMKDMNSKT DMYRANAIRV LCRIIDSTLL TQIERYLKQA 150
    IVDKNPVVAS AALVSGIYLL QTSPEVVKRW SNEVQEAVQS RAALVQFHAL 200
    ALLHQIRQND RLAVSKLVTS LTRGSVRSPL AQCLLIRYTS QVIRESSMNS 250
    QGGDRPFFDF LESCLRNKAE MVILEAARAI TELNGVTSRE LTPAITVLQL 300
    FLSSSKPVLR FAAVRTLNKV ASTHPLAVTN CNIDMESLIS DQNRSIATLA 350
    ITTLLKTGNE SSVDRLMKQM TNFMSDIADE FKIVVVEAIR SLCLKFPLKY 400
    RSLMNFLSNI LREEGGFEYK KAIVDSIIIL IRDIPDAKES GLFHLCEFIE 450
    DCEFTYMSTQ ILHFLGNEGP KTSDPSKYIR YIYNRVILEN ATVRASAVST 500
    LAKFGALVDS LKPRIFVLLR RCLFDGDDEV RDRATLYLKL LGGEATVGET 550
    EKDVNEFLFG SFDIPLVNLE TSLQNYEPSE APFDISSVSL ETKSQPLAEK 600
    KTTGKKPTGP ASALSGPVPT VDASYEKLLS SIPEFAGFGK LFKSSAPVEL 650
    TEAETEYSVN VVKHIYDGHV VLQYNCTNTI PEQLLEEVVV FVDASEADEF 700
    SEVATKSLRS LPYDSPGQTF VAFEKLEGVL ATGKFSNILK FIVKEVDPST 750
    GEADDDGVED EYQLEDLEIT SADYMLKVGV SNFRNAWESM DPESERVDEY 800
    GLGARESLAE AVSAVIGILG MQPCEGTDVV PSNSRSHTCL LSGVFIGNVK 850
    VLVRLSFGLS GPKEVAMKLA VRSDDPEISD KIHEIVANG 889
    Length:889
    Mass (Da):98,554
    Last modified:July 5, 2004 - v1
    Checksum:i5B5FE7A1C4228BF6
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti761 – 7611E → K in AK100095. (PubMed:12869764)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP005259 Genomic DNA. Translation: BAC84213.1.
    AP008213 Genomic DNA. Translation: BAF21045.1.
    AK100095 mRNA. No translation available.
    RefSeqiNP_001059131.1. NM_001065666.1.
    UniGeneiOs.7984.

    Genome annotation databases

    EnsemblPlantsiOS07T0201100-01; OS07T0201100-01; OS07G0201100.
    GeneIDi4342665.
    KEGGiosa:4342665.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP005259 Genomic DNA. Translation: BAC84213.1 .
    AP008213 Genomic DNA. Translation: BAF21045.1 .
    AK100095 mRNA. No translation available.
    RefSeqi NP_001059131.1. NM_001065666.1.
    UniGenei Os.7984.

    3D structure databases

    ProteinModelPortali Q6Z382.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q6Z382.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS07T0201100-01 ; OS07T0201100-01 ; OS07G0201100 .
    GeneIDi 4342665.
    KEGGi osa:4342665.

    Organism-specific databases

    Gramenei Q6Z382.

    Phylogenomic databases

    eggNOGi COG5240.
    HOGENOMi HOG000184434.
    KOi K17267.
    OMAi IKHTFAN.

    Family and domain databases

    Gene3Di 1.25.10.10. 1 hit.
    2.60.40.1480. 1 hit.
    3.30.310.30. 1 hit.
    InterProi IPR011989. ARM-like.
    IPR016024. ARM-type_fold.
    IPR002553. Clathrin/coatomer_adapt-like_N.
    IPR015873. Clathrin_a/coatomer_app_sub_C.
    IPR009028. Coatomer/calthrin_app_sub_C.
    IPR013041. Coatomer/clathrin_app_Ig-like.
    IPR017106. Coatomer_gsu.
    IPR013040. Coatomer_gsu_app_Ig-like-sub.
    [Graphical view ]
    PANTHERi PTHR10261. PTHR10261. 1 hit.
    Pfami PF01602. Adaptin_N. 1 hit.
    PF08752. COP-gamma_platf. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037093. Coatomer_gamma_subunit. 1 hit.
    SUPFAMi SSF48371. SSF48371. 1 hit.
    SSF49348. SSF49348. 1 hit.
    SSF55711. SSF55711. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiCOPG2_ORYSJ
    AccessioniPrimary (citable) accession number: Q6Z382
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 1, 2007
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3