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Q6Z382 (COPG2_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Coatomer subunit gamma-2
Alternative name(s):
Gamma-2-coat protein
Short name=Gamma-2-COP
Gene names
Ordered Locus Names:Os07g0201100, LOC_Os07g10150
ORF Names:P0519E02.25
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length889 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins By similarity.

Subunit structure

Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits By similarity.

Subcellular location

Cytoplasm By similarity. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side By similarity. Cytoplasmic vesicleCOPI-coated vesicle membrane; Peripheral membrane protein; Cytoplasmic side By similarity. Note: The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it By similarity.

Sequence similarities

Belongs to the COPG family.

Contains 5 HEAT repeats.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 889889Coatomer subunit gamma-2
PRO_0000285629

Regions

Repeat67 – 10236HEAT 1
Repeat103 – 14038HEAT 2
Repeat289 – 32638HEAT 3
Repeat328 – 36033HEAT 4
Repeat361 – 39838HEAT 5

Experimental info

Sequence conflict7611E → K in AK100095. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Q6Z382 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 5B5FE7A1C4228BF6

FASTA88998,554
        10         20         30         40         50         60 
MAQPLVVKKD DDLDEEEYYS PFLGIEKGAV LQEARVFHDP QLDARRCCQV ITKLLYLLNQ 

        70         80         90        100        110        120 
GDTFTKVEAT EVFFATTKLF QSKDAGLRRM VYLMIKELSP SADEVIIVTS SLMKDMNSKT 

       130        140        150        160        170        180 
DMYRANAIRV LCRIIDSTLL TQIERYLKQA IVDKNPVVAS AALVSGIYLL QTSPEVVKRW 

       190        200        210        220        230        240 
SNEVQEAVQS RAALVQFHAL ALLHQIRQND RLAVSKLVTS LTRGSVRSPL AQCLLIRYTS 

       250        260        270        280        290        300 
QVIRESSMNS QGGDRPFFDF LESCLRNKAE MVILEAARAI TELNGVTSRE LTPAITVLQL 

       310        320        330        340        350        360 
FLSSSKPVLR FAAVRTLNKV ASTHPLAVTN CNIDMESLIS DQNRSIATLA ITTLLKTGNE 

       370        380        390        400        410        420 
SSVDRLMKQM TNFMSDIADE FKIVVVEAIR SLCLKFPLKY RSLMNFLSNI LREEGGFEYK 

       430        440        450        460        470        480 
KAIVDSIIIL IRDIPDAKES GLFHLCEFIE DCEFTYMSTQ ILHFLGNEGP KTSDPSKYIR 

       490        500        510        520        530        540 
YIYNRVILEN ATVRASAVST LAKFGALVDS LKPRIFVLLR RCLFDGDDEV RDRATLYLKL 

       550        560        570        580        590        600 
LGGEATVGET EKDVNEFLFG SFDIPLVNLE TSLQNYEPSE APFDISSVSL ETKSQPLAEK 

       610        620        630        640        650        660 
KTTGKKPTGP ASALSGPVPT VDASYEKLLS SIPEFAGFGK LFKSSAPVEL TEAETEYSVN 

       670        680        690        700        710        720 
VVKHIYDGHV VLQYNCTNTI PEQLLEEVVV FVDASEADEF SEVATKSLRS LPYDSPGQTF 

       730        740        750        760        770        780 
VAFEKLEGVL ATGKFSNILK FIVKEVDPST GEADDDGVED EYQLEDLEIT SADYMLKVGV 

       790        800        810        820        830        840 
SNFRNAWESM DPESERVDEY GLGARESLAE AVSAVIGILG MQPCEGTDVV PSNSRSHTCL 

       850        860        870        880 
LSGVFIGNVK VLVRLSFGLS GPKEVAMKLA VRSDDPEISD KIHEIVANG 

« Hide

References

« Hide 'large scale' references
[1]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[3]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP005259 Genomic DNA. Translation: BAC84213.1.
AP008213 Genomic DNA. Translation: BAF21045.1.
AK100095 mRNA. No translation available.
RefSeqNP_001059131.1. NM_001065666.1.
UniGeneOs.7984.

3D structure databases

ProteinModelPortalQ6Z382.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ6Z382.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS07T0201100-01; OS07T0201100-01; OS07G0201100.
GeneID4342665.
KEGGosa:4342665.

Organism-specific databases

GrameneQ6Z382.

Phylogenomic databases

eggNOGCOG5240.
HOGENOMHOG000184434.
KOK17267.
OMALHMVKMS.
ProtClustDBCLSN2681006.

Family and domain databases

Gene3D1.25.10.10. 1 hit.
2.60.40.1480. 1 hit.
3.30.310.30. 1 hit.
InterProIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR002553. Clathrin/coatomer_adapt-like_N.
IPR015873. Clathrin_a/coatomer_app_sub_C.
IPR009028. Coatomer/calthrin_app_sub_C.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR017106. Coatomer_gsu.
IPR013040. Coatomer_gsu_app_Ig-like-sub.
[Graphical view]
PANTHERPTHR10261. PTHR10261. 1 hit.
PfamPF01602. Adaptin_N. 1 hit.
PF08752. COP-gamma_platf. 1 hit.
[Graphical view]
PIRSFPIRSF037093. Coatomer_gamma_subunit. 1 hit.
SUPFAMSSF48371. SSF48371. 1 hit.
SSF49348. SSF49348. 1 hit.
SSF55711. SSF55711. 1 hit.
ProtoNetSearch...

Entry information

Entry nameCOPG2_ORYSJ
AccessionPrimary (citable) accession number: Q6Z382
Entry history
Integrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: July 5, 2004
Last modified: April 16, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations