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Q6Z382

- COPG2_ORYSJ

UniProt

Q6Z382 - COPG2_ORYSJ

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Protein

Coatomer subunit gamma-2

Gene

Os07g0201100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity).By similarity

GO - Molecular functioni

  1. structural molecule activity Source: InterPro

GO - Biological processi

  1. intracellular protein transport Source: InterPro
  2. vesicle-mediated transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

ER-Golgi transport, Protein transport, Transport

Enzyme and pathway databases

ReactomeiREACT_263238. COPI Mediated Transport.

Names & Taxonomyi

Protein namesi
Recommended name:
Coatomer subunit gamma-2
Alternative name(s):
Gamma-2-coat protein
Short name:
Gamma-2-COP
Gene namesi
Ordered Locus Names:Os07g0201100, LOC_Os07g10150
ORF Names:P0519E02.25
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 7

Organism-specific databases

GrameneiQ6Z382.

Subcellular locationi

Cytoplasm By similarity. Golgi apparatus membrane By similarity; Peripheral membrane protein By similarity; Cytoplasmic side By similarity. Cytoplasmic vesicleCOPI-coated vesicle membrane By similarity; Peripheral membrane protein By similarity; Cytoplasmic side By similarity
Note: The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it.By similarity

GO - Cellular componenti

  1. COPI vesicle coat Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoplasmic vesicle, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 889889Coatomer subunit gamma-2PRO_0000285629Add
BLAST

Proteomic databases

PRIDEiQ6Z382.

Expressioni

Gene expression databases

ExpressionAtlasiQ6Z382. baseline.

Interactioni

Subunit structurei

Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits.By similarity

Structurei

3D structure databases

ProteinModelPortaliQ6Z382.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati67 – 10236HEAT 1Add
BLAST
Repeati103 – 14038HEAT 2Add
BLAST
Repeati289 – 32638HEAT 3Add
BLAST
Repeati328 – 36033HEAT 4Add
BLAST
Repeati361 – 39838HEAT 5Add
BLAST

Sequence similaritiesi

Belongs to the COPG family.Curated
Contains 5 HEAT repeats.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG5240.
HOGENOMiHOG000184434.
InParanoidiQ6Z382.
KOiK17267.
OMAiIKHTFAN.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
2.60.40.1480. 1 hit.
3.30.310.30. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR002553. Clathrin/coatomer_adapt-like_N.
IPR015873. Clathrin_a/coatomer_app_sub_C.
IPR009028. Coatomer/calthrin_app_sub_C.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR017106. Coatomer_gsu.
IPR013040. Coatomer_gsu_app_Ig-like-sub.
[Graphical view]
PANTHERiPTHR10261. PTHR10261. 1 hit.
PfamiPF01602. Adaptin_N. 1 hit.
PF08752. COP-gamma_platf. 1 hit.
[Graphical view]
PIRSFiPIRSF037093. Coatomer_gamma_subunit. 1 hit.
SUPFAMiSSF48371. SSF48371. 1 hit.
SSF49348. SSF49348. 1 hit.
SSF55711. SSF55711. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6Z382-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAQPLVVKKD DDLDEEEYYS PFLGIEKGAV LQEARVFHDP QLDARRCCQV
60 70 80 90 100
ITKLLYLLNQ GDTFTKVEAT EVFFATTKLF QSKDAGLRRM VYLMIKELSP
110 120 130 140 150
SADEVIIVTS SLMKDMNSKT DMYRANAIRV LCRIIDSTLL TQIERYLKQA
160 170 180 190 200
IVDKNPVVAS AALVSGIYLL QTSPEVVKRW SNEVQEAVQS RAALVQFHAL
210 220 230 240 250
ALLHQIRQND RLAVSKLVTS LTRGSVRSPL AQCLLIRYTS QVIRESSMNS
260 270 280 290 300
QGGDRPFFDF LESCLRNKAE MVILEAARAI TELNGVTSRE LTPAITVLQL
310 320 330 340 350
FLSSSKPVLR FAAVRTLNKV ASTHPLAVTN CNIDMESLIS DQNRSIATLA
360 370 380 390 400
ITTLLKTGNE SSVDRLMKQM TNFMSDIADE FKIVVVEAIR SLCLKFPLKY
410 420 430 440 450
RSLMNFLSNI LREEGGFEYK KAIVDSIIIL IRDIPDAKES GLFHLCEFIE
460 470 480 490 500
DCEFTYMSTQ ILHFLGNEGP KTSDPSKYIR YIYNRVILEN ATVRASAVST
510 520 530 540 550
LAKFGALVDS LKPRIFVLLR RCLFDGDDEV RDRATLYLKL LGGEATVGET
560 570 580 590 600
EKDVNEFLFG SFDIPLVNLE TSLQNYEPSE APFDISSVSL ETKSQPLAEK
610 620 630 640 650
KTTGKKPTGP ASALSGPVPT VDASYEKLLS SIPEFAGFGK LFKSSAPVEL
660 670 680 690 700
TEAETEYSVN VVKHIYDGHV VLQYNCTNTI PEQLLEEVVV FVDASEADEF
710 720 730 740 750
SEVATKSLRS LPYDSPGQTF VAFEKLEGVL ATGKFSNILK FIVKEVDPST
760 770 780 790 800
GEADDDGVED EYQLEDLEIT SADYMLKVGV SNFRNAWESM DPESERVDEY
810 820 830 840 850
GLGARESLAE AVSAVIGILG MQPCEGTDVV PSNSRSHTCL LSGVFIGNVK
860 870 880
VLVRLSFGLS GPKEVAMKLA VRSDDPEISD KIHEIVANG
Length:889
Mass (Da):98,554
Last modified:July 5, 2004 - v1
Checksum:i5B5FE7A1C4228BF6
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti761 – 7611E → K in AK100095. (PubMed:12869764)Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005259 Genomic DNA. Translation: BAC84213.1.
AP008213 Genomic DNA. Translation: BAF21045.1.
AK100095 mRNA. No translation available.
RefSeqiNP_001059131.1. NM_001065666.1.
UniGeneiOs.7984.

Genome annotation databases

EnsemblPlantsiOS07T0201100-01; OS07T0201100-01; OS07G0201100.
GeneIDi4342665.
KEGGiosa:4342665.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005259 Genomic DNA. Translation: BAC84213.1 .
AP008213 Genomic DNA. Translation: BAF21045.1 .
AK100095 mRNA. No translation available.
RefSeqi NP_001059131.1. NM_001065666.1.
UniGenei Os.7984.

3D structure databases

ProteinModelPortali Q6Z382.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q6Z382.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS07T0201100-01 ; OS07T0201100-01 ; OS07G0201100 .
GeneIDi 4342665.
KEGGi osa:4342665.

Organism-specific databases

Gramenei Q6Z382.

Phylogenomic databases

eggNOGi COG5240.
HOGENOMi HOG000184434.
InParanoidi Q6Z382.
KOi K17267.
OMAi IKHTFAN.

Enzyme and pathway databases

Reactomei REACT_263238. COPI Mediated Transport.

Gene expression databases

ExpressionAtlasi Q6Z382. baseline.

Family and domain databases

Gene3Di 1.25.10.10. 1 hit.
2.60.40.1480. 1 hit.
3.30.310.30. 1 hit.
InterProi IPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR002553. Clathrin/coatomer_adapt-like_N.
IPR015873. Clathrin_a/coatomer_app_sub_C.
IPR009028. Coatomer/calthrin_app_sub_C.
IPR013041. Coatomer/clathrin_app_Ig-like.
IPR017106. Coatomer_gsu.
IPR013040. Coatomer_gsu_app_Ig-like-sub.
[Graphical view ]
PANTHERi PTHR10261. PTHR10261. 1 hit.
Pfami PF01602. Adaptin_N. 1 hit.
PF08752. COP-gamma_platf. 1 hit.
[Graphical view ]
PIRSFi PIRSF037093. Coatomer_gamma_subunit. 1 hit.
SUPFAMi SSF48371. SSF48371. 1 hit.
SSF49348. SSF49348. 1 hit.
SSF55711. SSF55711. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiCOPG2_ORYSJ
AccessioniPrimary (citable) accession number: Q6Z382
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: July 5, 2004
Last modified: November 26, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3