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Protein

Bifunctional nuclease 2

Gene

BBD2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Bifunctional nuclease with both RNase and DNase activities. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen (By similarity).By similarity

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase, Nuclease

Names & Taxonomyi

Protein namesi
Recommended name:
Bifunctional nuclease 2 (EC:3.1.-.-)
Short name:
OsBBD2
Gene namesi
Name:BBD2
Ordered Locus Names:Os08g0357000, LOC_Os08g26870
ORF Names:OsJ_27034, P0426E02.15
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004195521 – 325Bifunctional nuclease 2Add BLAST325

Proteomic databases

PaxDbiQ6YZM6.
PRIDEiQ6YZM6.

Expressioni

Gene expression databases

ExpressionAtlasiQ6YZM6. baseline and differential.
GenevisibleiQ6YZM6. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os08g26870.1.

Structurei

3D structure databases

ProteinModelPortaliQ6YZM6.
SMRiQ6YZM6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini119 – 254BFNAdd BLAST136
Domaini285 – 320UVRAdd BLAST36

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi67 – 72Poly-Ser6

Sequence similaritiesi

Belongs to the bifunctional nuclease family.Curated

Phylogenomic databases

eggNOGiENOG410IJTW. Eukaryota.
ENOG4110AP6. LUCA.
HOGENOMiHOG000029667.
InParanoidiQ6YZM6.
OMAiVGNASEC.
OrthoDBiEOG09360IMT.

Family and domain databases

InterProiView protein in InterPro
IPR036104. BFN_sf.
IPR003729. Bi_nuclease_dom.
PfamiView protein in Pfam
PF02577. DNase-RNase. 1 hit.
SUPFAMiSSF103256. SSF103256. 1 hit.
PROSITEiView protein in PROSITE
PS51658. BFN. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6YZM6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMEGPILCR AVMQAKLPVT MISNSLTKSG QLGTAFLGCV CKYRNITRLI
60 70 80 90 100
SPIYQPAQKN FATVCGSFSS SSDGNGYMAG NFSESDEDYV NSTVLEAVEV
110 120 130 140 150
RSGAEGYVIK MRDGKNLRCV HNNSQGRNIP ESAPQPAIVL RIEDGSETLL
160 170 180 190 200
PIIVLEMPSV LLMAAIRNVH IARPTIYQVV KEMIDKMGYE VKLVRINKRI
210 220 230 240 250
QEAYCAELFL TKVGDHTESI TFDLRPSDAI NIAVRCKVPI QVHRSLAYSD
260 270 280 290 300
GIRSVEPARM AIAAGMSDGL LFTELDRPDG QPCVEAQEFG LIRNMLIAAV
310 320
EERYKDAATW RDKLMLLRSK RKNWA
Length:325
Mass (Da):36,038
Last modified:July 5, 2004 - v1
Checksum:i0AD341C31921367D
GO

Sequence cautioni

The sequence BAF23538 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence EAZ42463 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU325988 mRNA. Translation: ABY52937.1.
AP005520 Genomic DNA. Translation: BAD03757.1.
AP008214 Genomic DNA. Translation: BAF23538.2. Sequence problems.
AP014964 Genomic DNA. Translation: BAT05082.1.
CM000145 Genomic DNA. Translation: EAZ42463.1. Sequence problems.
AK105899 mRNA. Translation: BAG97425.1.
RefSeqiXP_015650236.1. XM_015794750.1.
UniGeneiOs.14927.

Genome annotation databases

EnsemblPlantsiOS08T0357000-02; OS08T0357000-02; OS08G0357000.
GeneIDi4345362.
GrameneiOS08T0357000-02; OS08T0357000-02; OS08G0357000.
KEGGiosa:4345362.

Similar proteinsi

Entry informationi

Entry nameiBBD2_ORYSJ
AccessioniPrimary (citable) accession number: Q6YZM6
Secondary accession number(s): A0A0N7KPQ6, A3BSC4, Q0J677
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2012
Last sequence update: July 5, 2004
Last modified: October 25, 2017
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families