Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Squamosa promoter-binding-like protein 16

Gene

SPL16

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi118 – 1181Zinc 1By similarity
Metal bindingi123 – 1231Zinc 1By similarity
Metal bindingi140 – 1401Zinc 1By similarity
Metal bindingi143 – 1431Zinc 1By similarity
Metal bindingi159 – 1591Zinc 2By similarity
Metal bindingi162 – 1621Zinc 2By similarity
Metal bindingi166 – 1661Zinc 2By similarity
Metal bindingi178 – 1781Zinc 2By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri115 – 19278SBP-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Squamosa promoter-binding-like protein 16
Gene namesi
Name:SPL16
Ordered Locus Names:Os08g0531600, LOC_Os08g41940
ORF Names:P0702E04.9
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 8

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 455455Squamosa promoter-binding-like protein 16PRO_0000308244Add
BLAST

Proteomic databases

PaxDbiQ6YZE8.

Expressioni

Tissue specificityi

Expressed in young panicles.1 Publication

Inductioni

Negatively regulated by microRNAs miR156b and miR156h.1 Publication

Gene expression databases

ExpressionAtlasiQ6YZE8. baseline and differential.
GenevisibleiQ6YZE8. OS.

Structurei

3D structure databases

ProteinModelPortaliQ6YZE8.
SMRiQ6YZE8. Positions 118-191.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi175 – 19117Bipartite nuclear localization signalSequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi23 – 8462Gly-richAdd
BLAST

Domaini

The SBP-type zinc finger is required for the binding to DNA.By similarity

Sequence similaritiesi

Contains 1 SBP-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri115 – 19278SBP-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IHUF. Eukaryota.
ENOG410YD0Z. LUCA.
HOGENOMiHOG000238619.
InParanoidiQ6YZE8.
OMAiVDGCKED.

Family and domain databases

Gene3Di4.10.1100.10. 1 hit.
InterProiIPR004333. Transcpt_factor_SBP-box.
[Graphical view]
PfamiPF03110. SBP. 1 hit.
[Graphical view]
SUPFAMiSSF103612. SSF103612. 1 hit.
PROSITEiPS51141. ZF_SBP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6YZE8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ
60 70 80 90 100
ECSVDLKLGG LGEFGGGGAQ PRVAVAGEPA KGKGPAAAAT GAAAAASSAP
110 120 130 140 150
AKRPRGAAAA GQQQCPSCAV DGCKEDLSKC RDYHRRHKVC EAHSKTPLVV
160 170 180 190 200
VSGREMRFCQ QCSRFHLLQE FDEAKRSCRK RLDGHNRRRR KPQPDPMNSA
210 220 230 240 250
SYLASQQGAR FSPFATPRPE ASWTGMIKTE ESPYYTHHQI PLGISSRQQH
260 270 280 290 300
FVGSTSDGGR RFPFLQEGEI SFGTGAGAGG VPMDQAAAAA AASVCQPLLK
310 320 330 340 350
TVAPPPPPHG GGGSGGGKMF SDGGLTQVLD SDCALSLLSA PANSTAIDVG
360 370 380 390 400
GGRVVVQPTE HIPMAQPLIS GLQFGGGGGS SAWFAARPHH QAATGAAATA
410 420 430 440 450
VVVSTAGFSC PVVESEQLNT VLSSNDNEMN YNGMFHVGGE GSSDGTSSSL

PFSWQ
Length:455
Mass (Da):46,579
Last modified:July 5, 2004 - v1
Checksum:i00EF47002AE780C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005529 Genomic DNA. Translation: BAD11641.1.
AP008214 Genomic DNA. Translation: BAF24248.1.
AP014964 Genomic DNA. Translation: BAT06401.1.
AK109469 mRNA. Translation: BAG98762.1.
RefSeqiXP_015649377.1. XM_015793891.1.
UniGeneiOs.56157.

Genome annotation databases

EnsemblPlantsiOS08T0531600-01; OS08T0531600-01; OS08G0531600.
GeneIDi4346133.
GrameneiOS08T0531600-01; OS08T0531600-01; OS08G0531600.
KEGGiosa:4346133.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005529 Genomic DNA. Translation: BAD11641.1.
AP008214 Genomic DNA. Translation: BAF24248.1.
AP014964 Genomic DNA. Translation: BAT06401.1.
AK109469 mRNA. Translation: BAG98762.1.
RefSeqiXP_015649377.1. XM_015793891.1.
UniGeneiOs.56157.

3D structure databases

ProteinModelPortaliQ6YZE8.
SMRiQ6YZE8. Positions 118-191.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ6YZE8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS08T0531600-01; OS08T0531600-01; OS08G0531600.
GeneIDi4346133.
GrameneiOS08T0531600-01; OS08T0531600-01; OS08G0531600.
KEGGiosa:4346133.

Phylogenomic databases

eggNOGiENOG410IHUF. Eukaryota.
ENOG410YD0Z. LUCA.
HOGENOMiHOG000238619.
InParanoidiQ6YZE8.
OMAiVDGCKED.

Gene expression databases

ExpressionAtlasiQ6YZE8. baseline and differential.
GenevisibleiQ6YZE8. OS.

Family and domain databases

Gene3Di4.10.1100.10. 1 hit.
InterProiIPR004333. Transcpt_factor_SBP-box.
[Graphical view]
PfamiPF03110. SBP. 1 hit.
[Graphical view]
SUPFAMiSSF103612. SSF103612. 1 hit.
PROSITEiPS51141. ZF_SBP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  5. "Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice."
    Xie K., Wu C., Xiong L.
    Plant Physiol. 142:280-293(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, INDUCTION, GENE FAMILY, NOMENCLATURE.
  6. "Comparative study of SBP-box gene family in Arabidopsis and rice."
    Yang Z., Wang X., Gu S., Hu Z., Xu H., Xu C.
    Gene 407:1-11(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiSPL16_ORYSJ
AccessioniPrimary (citable) accession number: Q6YZE8
Secondary accession number(s): B7F2B5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: July 5, 2004
Last modified: June 8, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.