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Q6YW64 (DRB4_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Double-stranded RNA-binding protein 4
Alternative name(s):
dsRNA-binding protein 4
Gene names
Name:DRB4
Ordered Locus Names:Os08g0384100, LOC_Os08g29530
ORF Names:B1090H08.31
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length312 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Binds double-stranded RNA By similarity.

Sequence similarities

Contains 2 DRBM (double-stranded RNA-binding) domains.

Ontologies

Keywords
   DomainRepeat
   LigandRNA-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processrRNA catabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

ribonuclease III activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 312312Double-stranded RNA-binding protein 4
PRO_0000404681

Regions

Domain38 – 10770DRBM 1
Domain128 – 19568DRBM 2
Compositional bias27 – 359Poly-Pro

Experimental info

Sequence conflict1161T → A in AK065829. Ref.3
Sequence conflict1971N → D in AK065829. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Q6YW64 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: B262E32B55E98735

FASTA31234,198
        10         20         30         40         50         60 
MAAATAEPLA VAVAVAHTAT AGTDHSPAPL PPPPPHCNYK SKLQEYLQQA NKQLPIYCTK 

        70         80         90        100        110        120 
CKGEHHQLKF KSTVMVDGEE FSSTFCHRRV KDAEQDAAKV AYDTLLERKE TETDDTDVFE 

       130        140        150        160        170        180 
LIDQDVVFSK SILHEYTTKT KTDQPEYSVT KTEGSVTPYV SSVSFAGHTY TGGAARNKKD 

       190        200        210        220        230        240 
AEQKAARAAV KSLLATNYTS MAKIVRSKEK LIRAISPSGY NKGIDSNPTN KKLPFAPIKF 

       250        260        270        280        290        300 
TPPSIFKLYD GEIDMLSVPQ ALFAPLVAAE EPKVRPAAEP ASNPSEQAVH VSKKHKDNKV 

       310 
RGPEVKEERV AQ 

« Hide

References

« Hide 'large scale' references
[1]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[3]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP005795 Genomic DNA. Translation: BAD05825.1.
AP008214 Genomic DNA. Translation: BAF23614.1.
AK065829 mRNA. No translation available.
RefSeqNP_001061700.1. NM_001068235.1.
UniGeneOs.22570.

3D structure databases

ProteinModelPortalQ6YW64.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS08T0384100-01; OS08T0384100-01; OS08G0384100.
GeneID4345448.
KEGGosa:4345448.

Organism-specific databases

GrameneQ6YW64.

Phylogenomic databases

eggNOGNOG326243.
HOGENOMHOG000242763.
OMAYKVESEG.
ProtClustDBCLSN2697287.

Family and domain databases

Gene3D3.30.160.20. 2 hits.
InterProIPR014720. dsRNA-bd_dom.
IPR011907. RNase_III.
[Graphical view]
PANTHERPTHR11207. PTHR11207. 1 hit.
PfamPF00035. dsrm. 2 hits.
[Graphical view]
SMARTSM00358. DSRM. 2 hits.
[Graphical view]
PROSITEPS50137. DS_RBD. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDRB4_ORYSJ
AccessionPrimary (citable) accession number: Q6YW64
Entry history
Integrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: July 5, 2004
Last modified: April 16, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations