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Q6YW64

- DRB4_ORYSJ

UniProt

Q6YW64 - DRB4_ORYSJ

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Protein
Double-stranded RNA-binding protein 4
Gene
DRB4, Os08g0384100, LOC_Os08g29530, B1090H08.31
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

Binds double-stranded RNA By similarity.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. ribonuclease III activity Source: InterPro

GO - Biological processi

  1. rRNA catabolic process Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Double-stranded RNA-binding protein 4
Alternative name(s):
dsRNA-binding protein 4
Gene namesi
Name:DRB4
Ordered Locus Names:Os08g0384100, LOC_Os08g29530
ORF Names:B1090H08.31
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 8

Organism-specific databases

GrameneiQ6YW64.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 312312Double-stranded RNA-binding protein 4
PRO_0000404681Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ6YW64.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini38 – 10770DRBM 1
Add
BLAST
Domaini128 – 19568DRBM 2
Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi27 – 359Poly-Pro

Sequence similaritiesi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiNOG326243.
HOGENOMiHOG000242763.
OMAiDAVFCKS.

Family and domain databases

Gene3Di3.30.160.20. 2 hits.
InterProiIPR014720. dsRNA-bd_dom.
IPR011907. RNase_III.
[Graphical view]
PANTHERiPTHR11207. PTHR11207. 1 hit.
PfamiPF00035. dsrm. 2 hits.
[Graphical view]
SMARTiSM00358. DSRM. 2 hits.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6YW64-1 [UniParc]FASTAAdd to Basket

« Hide

MAAATAEPLA VAVAVAHTAT AGTDHSPAPL PPPPPHCNYK SKLQEYLQQA    50
NKQLPIYCTK CKGEHHQLKF KSTVMVDGEE FSSTFCHRRV KDAEQDAAKV 100
AYDTLLERKE TETDDTDVFE LIDQDVVFSK SILHEYTTKT KTDQPEYSVT 150
KTEGSVTPYV SSVSFAGHTY TGGAARNKKD AEQKAARAAV KSLLATNYTS 200
MAKIVRSKEK LIRAISPSGY NKGIDSNPTN KKLPFAPIKF TPPSIFKLYD 250
GEIDMLSVPQ ALFAPLVAAE EPKVRPAAEP ASNPSEQAVH VSKKHKDNKV 300
RGPEVKEERV AQ 312
Length:312
Mass (Da):34,198
Last modified:July 5, 2004 - v1
Checksum:iB262E32B55E98735
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti116 – 1161T → A in AK065829. 1 Publication
Sequence conflicti197 – 1971N → D in AK065829. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP005795 Genomic DNA. Translation: BAD05825.1.
AP008214 Genomic DNA. Translation: BAF23614.1.
AK065829 mRNA. No translation available.
RefSeqiNP_001061700.1. NM_001068235.1.
UniGeneiOs.22570.

Genome annotation databases

EnsemblPlantsiOS08T0384100-01; OS08T0384100-01; OS08G0384100.
GeneIDi4345448.
KEGGiosa:4345448.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP005795 Genomic DNA. Translation: BAD05825.1 .
AP008214 Genomic DNA. Translation: BAF23614.1 .
AK065829 mRNA. No translation available.
RefSeqi NP_001061700.1. NM_001068235.1.
UniGenei Os.22570.

3D structure databases

ProteinModelPortali Q6YW64.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS08T0384100-01 ; OS08T0384100-01 ; OS08G0384100 .
GeneIDi 4345448.
KEGGi osa:4345448.

Organism-specific databases

Gramenei Q6YW64.

Phylogenomic databases

eggNOGi NOG326243.
HOGENOMi HOG000242763.
OMAi DAVFCKS.

Family and domain databases

Gene3Di 3.30.160.20. 2 hits.
InterProi IPR014720. dsRNA-bd_dom.
IPR011907. RNase_III.
[Graphical view ]
PANTHERi PTHR11207. PTHR11207. 1 hit.
Pfami PF00035. dsrm. 2 hits.
[Graphical view ]
SMARTi SM00358. DSRM. 2 hits.
[Graphical view ]
PROSITEi PS50137. DS_RBD. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiDRB4_ORYSJ
AccessioniPrimary (citable) accession number: Q6YW64
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: July 5, 2004
Last modified: May 14, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi