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Protein

Double-stranded RNA-binding protein 4

Gene

DRB4

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Binds double-stranded RNA.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Double-stranded RNA-binding protein 4
Alternative name(s):
dsRNA-binding protein 4
Gene namesi
Name:DRB4
Ordered Locus Names:Os08g0384100, LOC_Os08g29530
ORF Names:B1090H08.31
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004046811 – 312Double-stranded RNA-binding protein 4Add BLAST312

Proteomic databases

PaxDbiQ6YW64
PRIDEiQ6YW64

Expressioni

Gene expression databases

ExpressionAtlasiQ6YW64 differential
GenevisibleiQ6YW64 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os08g29530.1

Structurei

3D structure databases

ProteinModelPortaliQ6YW64
SMRiQ6YW64
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini38 – 107DRBM 1PROSITE-ProRule annotationAdd BLAST70
Domaini128 – 195DRBM 2PROSITE-ProRule annotationAdd BLAST68

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi27 – 35Poly-Pro9

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410J0BW Eukaryota
ENOG410YKXP LUCA
HOGENOMiHOG000242763
InParanoidiQ6YW64
OMAiDAVFCKS
OrthoDBiEOG09360P0K

Family and domain databases

InterProiView protein in InterPro
IPR014720 dsRBD_dom
PfamiView protein in Pfam
PF00035 dsrm, 2 hits
SMARTiView protein in SMART
SM00358 DSRM, 2 hits
PROSITEiView protein in PROSITE
PS50137 DS_RBD, 2 hits

Sequencei

Sequence statusi: Complete.

Q6YW64-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAATAEPLA VAVAVAHTAT AGTDHSPAPL PPPPPHCNYK SKLQEYLQQA
60 70 80 90 100
NKQLPIYCTK CKGEHHQLKF KSTVMVDGEE FSSTFCHRRV KDAEQDAAKV
110 120 130 140 150
AYDTLLERKE TETDDTDVFE LIDQDVVFSK SILHEYTTKT KTDQPEYSVT
160 170 180 190 200
KTEGSVTPYV SSVSFAGHTY TGGAARNKKD AEQKAARAAV KSLLATNYTS
210 220 230 240 250
MAKIVRSKEK LIRAISPSGY NKGIDSNPTN KKLPFAPIKF TPPSIFKLYD
260 270 280 290 300
GEIDMLSVPQ ALFAPLVAAE EPKVRPAAEP ASNPSEQAVH VSKKHKDNKV
310
RGPEVKEERV AQ
Length:312
Mass (Da):34,198
Last modified:July 5, 2004 - v1
Checksum:iB262E32B55E98735
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti116T → A in AK065829 (PubMed:12869764).Curated1
Sequence conflicti197N → D in AK065829 (PubMed:12869764).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005795 Genomic DNA Translation: BAD05825.1
AP008214 Genomic DNA Translation: BAF23614.1
AP014964 Genomic DNA Translation: BAT05244.1
AK065829 mRNA No translation available.
RefSeqiXP_015650897.1, XM_015795411.1
UniGeneiOs.22570

Genome annotation databases

EnsemblPlantsiOs08t0384100-01; Os08t0384100-01; Os08g0384100
GeneIDi4345448
GrameneiOs08t0384100-01; Os08t0384100-01; Os08g0384100
KEGGiosa:4345448

Similar proteinsi

Entry informationi

Entry nameiDRB4_ORYSJ
AccessioniPrimary (citable) accession number: Q6YW64
Secondary accession number(s): A0A0P0XG44
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: July 5, 2004
Last modified: May 23, 2018
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations

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