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Q6YW64

- DRB4_ORYSJ

UniProt

Q6YW64 - DRB4_ORYSJ

Protein

Double-stranded RNA-binding protein 4

Gene

DRB4

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    Binds double-stranded RNA.By similarity

    GO - Molecular functioni

    1. ribonuclease III activity Source: InterPro
    2. RNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. rRNA catabolic process Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Double-stranded RNA-binding protein 4
    Alternative name(s):
    dsRNA-binding protein 4
    Gene namesi
    Name:DRB4
    Ordered Locus Names:Os08g0384100, LOC_Os08g29530
    ORF Names:B1090H08.31
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 8

    Organism-specific databases

    GrameneiQ6YW64.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 312312Double-stranded RNA-binding protein 4PRO_0000404681Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliQ6YW64.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini38 – 10770DRBM 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini128 – 19568DRBM 2PROSITE-ProRule annotationAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi27 – 359Poly-Pro

    Sequence similaritiesi

    Contains 2 DRBM (double-stranded RNA-binding) domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiNOG326243.
    HOGENOMiHOG000242763.
    OMAiDAVFCKS.

    Family and domain databases

    Gene3Di3.30.160.20. 2 hits.
    InterProiIPR014720. dsRNA-bd_dom.
    IPR011907. RNase_III.
    [Graphical view]
    PANTHERiPTHR11207. PTHR11207. 1 hit.
    PfamiPF00035. dsrm. 2 hits.
    [Graphical view]
    SMARTiSM00358. DSRM. 2 hits.
    [Graphical view]
    PROSITEiPS50137. DS_RBD. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6YW64-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAAATAEPLA VAVAVAHTAT AGTDHSPAPL PPPPPHCNYK SKLQEYLQQA    50
    NKQLPIYCTK CKGEHHQLKF KSTVMVDGEE FSSTFCHRRV KDAEQDAAKV 100
    AYDTLLERKE TETDDTDVFE LIDQDVVFSK SILHEYTTKT KTDQPEYSVT 150
    KTEGSVTPYV SSVSFAGHTY TGGAARNKKD AEQKAARAAV KSLLATNYTS 200
    MAKIVRSKEK LIRAISPSGY NKGIDSNPTN KKLPFAPIKF TPPSIFKLYD 250
    GEIDMLSVPQ ALFAPLVAAE EPKVRPAAEP ASNPSEQAVH VSKKHKDNKV 300
    RGPEVKEERV AQ 312
    Length:312
    Mass (Da):34,198
    Last modified:July 5, 2004 - v1
    Checksum:iB262E32B55E98735
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti116 – 1161T → A in AK065829. (PubMed:12869764)Curated
    Sequence conflicti197 – 1971N → D in AK065829. (PubMed:12869764)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP005795 Genomic DNA. Translation: BAD05825.1.
    AP008214 Genomic DNA. Translation: BAF23614.1.
    AK065829 mRNA. No translation available.
    RefSeqiNP_001061700.1. NM_001068235.1.
    UniGeneiOs.22570.

    Genome annotation databases

    EnsemblPlantsiOS08T0384100-01; OS08T0384100-01; OS08G0384100.
    GeneIDi4345448.
    KEGGiosa:4345448.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP005795 Genomic DNA. Translation: BAD05825.1 .
    AP008214 Genomic DNA. Translation: BAF23614.1 .
    AK065829 mRNA. No translation available.
    RefSeqi NP_001061700.1. NM_001068235.1.
    UniGenei Os.22570.

    3D structure databases

    ProteinModelPortali Q6YW64.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS08T0384100-01 ; OS08T0384100-01 ; OS08G0384100 .
    GeneIDi 4345448.
    KEGGi osa:4345448.

    Organism-specific databases

    Gramenei Q6YW64.

    Phylogenomic databases

    eggNOGi NOG326243.
    HOGENOMi HOG000242763.
    OMAi DAVFCKS.

    Family and domain databases

    Gene3Di 3.30.160.20. 2 hits.
    InterProi IPR014720. dsRNA-bd_dom.
    IPR011907. RNase_III.
    [Graphical view ]
    PANTHERi PTHR11207. PTHR11207. 1 hit.
    Pfami PF00035. dsrm. 2 hits.
    [Graphical view ]
    SMARTi SM00358. DSRM. 2 hits.
    [Graphical view ]
    PROSITEi PS50137. DS_RBD. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiDRB4_ORYSJ
    AccessioniPrimary (citable) accession number: Q6YW64
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 8, 2011
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3