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Protein

Double-stranded RNA-binding protein 4

Gene

DRB4

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Binds double-stranded RNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Double-stranded RNA-binding protein 4
Alternative name(s):
dsRNA-binding protein 4
Gene namesi
Name:DRB4
Ordered Locus Names:Os08g0384100, LOC_Os08g29530
ORF Names:B1090H08.31
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 8

Organism-specific databases

GrameneiQ6YW64.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 312312Double-stranded RNA-binding protein 4PRO_0000404681Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiQ6YW64. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os08g29530.1.

Structurei

3D structure databases

ProteinModelPortaliQ6YW64.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini38 – 10770DRBM 1PROSITE-ProRule annotationAdd
BLAST
Domaini128 – 19568DRBM 2PROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi27 – 359Poly-Pro

Sequence similaritiesi

Contains 2 DRBM (double-stranded RNA-binding) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiNOG326243.
HOGENOMiHOG000242763.
InParanoidiQ6YW64.
OMAiSILHEYT.

Family and domain databases

Gene3Di3.30.160.20. 2 hits.
InterProiIPR014720. dsRNA-bd_dom.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
[Graphical view]
SMARTiSM00358. DSRM. 2 hits.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6YW64-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAATAEPLA VAVAVAHTAT AGTDHSPAPL PPPPPHCNYK SKLQEYLQQA
60 70 80 90 100
NKQLPIYCTK CKGEHHQLKF KSTVMVDGEE FSSTFCHRRV KDAEQDAAKV
110 120 130 140 150
AYDTLLERKE TETDDTDVFE LIDQDVVFSK SILHEYTTKT KTDQPEYSVT
160 170 180 190 200
KTEGSVTPYV SSVSFAGHTY TGGAARNKKD AEQKAARAAV KSLLATNYTS
210 220 230 240 250
MAKIVRSKEK LIRAISPSGY NKGIDSNPTN KKLPFAPIKF TPPSIFKLYD
260 270 280 290 300
GEIDMLSVPQ ALFAPLVAAE EPKVRPAAEP ASNPSEQAVH VSKKHKDNKV
310
RGPEVKEERV AQ
Length:312
Mass (Da):34,198
Last modified:July 5, 2004 - v1
Checksum:iB262E32B55E98735
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti116 – 1161T → A in AK065829 (PubMed:12869764).Curated
Sequence conflicti197 – 1971N → D in AK065829 (PubMed:12869764).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005795 Genomic DNA. Translation: BAD05825.1.
AP008214 Genomic DNA. Translation: BAF23614.1.
AK065829 mRNA. No translation available.
RefSeqiNP_001061700.1. NM_001068235.1.
UniGeneiOs.22570.

Genome annotation databases

EnsemblPlantsiOS08T0384100-01; OS08T0384100-01; OS08G0384100.
GeneIDi4345448.
KEGGiosa:4345448.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP005795 Genomic DNA. Translation: BAD05825.1.
AP008214 Genomic DNA. Translation: BAF23614.1.
AK065829 mRNA. No translation available.
RefSeqiNP_001061700.1. NM_001068235.1.
UniGeneiOs.22570.

3D structure databases

ProteinModelPortaliQ6YW64.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os08g29530.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS08T0384100-01; OS08T0384100-01; OS08G0384100.
GeneIDi4345448.
KEGGiosa:4345448.

Organism-specific databases

GrameneiQ6YW64.

Phylogenomic databases

eggNOGiNOG326243.
HOGENOMiHOG000242763.
InParanoidiQ6YW64.
OMAiSILHEYT.

Gene expression databases

ExpressionAtlasiQ6YW64. baseline.

Family and domain databases

Gene3Di3.30.160.20. 2 hits.
InterProiIPR014720. dsRNA-bd_dom.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
[Graphical view]
SMARTiSM00358. DSRM. 2 hits.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiDRB4_ORYSJ
AccessioniPrimary (citable) accession number: Q6YW64
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: July 5, 2004
Last modified: June 24, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.