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Protein

Capsid protein

Gene

ORF3

Organism
Botrytis virus X (isolate Botrytis cinerea/New Zealand/Howitt/2006) (BOTV-X)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for genome encapsidation.By similarity

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Short name:
CP
Gene namesi
Name:ORF3
OrganismiBotrytis virus X (isolate Botrytis cinerea/New Zealand/Howitt/2006) (BOTV-X)
Taxonomic identifieri686947 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaeBotrexvirus
Virus hostiBotryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea) [TaxID: 40559]
Proteomesi
  • UP000001664 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004010681 – 400Capsid proteinAdd BLAST400

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi35 – 41Poly-Asp7

Sequence similaritiesi

Belongs to the potexvirus capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG090000QE.

Family and domain databases

InterProiView protein in InterPro
IPR000052. Pltvir_coat.
PfamiView protein in Pfam
PF00286. Flexi_CP. 1 hit.
PRINTSiPR00232. POTXCARLCOAT.
PROSITEiView protein in PROSITE
PS00418. POTEX_CARLAVIRUS_COAT. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6YNQ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDPNLDQDTL PTHEEIDNDV DSAEEEPPEP PLLPDDIDDD DSHGSRTRRQ
60 70 80 90 100
VKPPPELLRA VGACLISGHY DGGNYFRWQQ SIAALYAKAG YAGDIRFHQA
110 120 130 140 150
AIQEYALDPV LPAPRVSYDL LVAHAGLRYQ ALLNEQLRTG KTPPADEALK
160 170 180 190 200
DAVRKAAQAA YDNAVKTGDY TPLIDIAFKG VDINKHASDV AQLAKMSVTM
210 220 230 240 250
DGTHIKFTAG EMPKDKVITS NSMASPNTVM NILNLITTSA NVTAVTCGIE
260 270 280 290 300
FAIACAHQGS SRYTRHTGTS TGGSTFELIA AHVKEHCTIR QFCSYFAKVV
310 320 330 340 350
WNHLLTHATP PVNWAKHGFT LDSRYAAFDF FDAVTNAAAL PPKNGLIRAP
360 370 380 390 400
TSEEIRAHNL NAHLLINASR QDDQVSSSAQ YTAAIAQAGG FKRPQIGWGE
Length:400
Mass (Da):43,503
Last modified:July 5, 2004 - v1
Checksum:i68FB45B43A2104DD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY055762 Genomic RNA. Translation: AAL17724.1.
RefSeqiNP_932309.1. NC_005132.1.

Genome annotation databases

GeneIDi2943230.
KEGGivg:2943230.

Entry informationi

Entry nameiCAPSD_BOTVX
AccessioniPrimary (citable) accession number: Q6YNQ5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 2, 2010
Last sequence update: July 5, 2004
Last modified: March 15, 2017
This is version 33 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families