Voltage gated N-type calcium channel Ca(V)2.2 - Rattus norvegicus (Rat)

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Unreviewed, UniProtKB/TrEMBL Q6XS92 (Q6XS92_RAT)

Last modified January 19, 2010. Version 28. History...

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Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Voltage gated N-type calcium channel Ca(V)2.2 EMBL AAO53230.1

Gene names

Name:

Cacna1b EMBL AAO53230.1 RGD 628852

Organism

Rattus norvegicus (Rat) EMBL AAO53230.1

Taxonomic identifier

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	111 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level.

Ontologies

Gene Ontology (GO)
Biological process	calcium ion transport Inferred from mutant phenotype. Source: RGD positive regulation of neurotransmitter secretion Inferred from mutant phenotype. Source: RGD response to ethanol Inferred from expression pattern. Source: RGD response to organic cyclic substance Inferred from direct assay. Source: RGD response to testosterone stimulus Inferred from mutant phenotype. Source: RGD
Cellular component	cell soma Inferred from direct assay. Source: RGD dendritic shaft Inferred from direct assay. Source: RGD integral to membrane Inferred from electronic annotation. Source: InterPro nerve terminal Inferred from direct assay. Source: RGD plasma membrane Inferred from direct assay. Source: RGD synaptosome Inferred from direct assay. Source: RGD
Molecular function	voltage-gated calcium channel activity Inferred from mutant phenotype. Source: RGD
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Experimental info

Non-terminal residue

1

EMBL AAO53230.1

Non-terminal residue

1

EMBL AAO53230.1

Sequences

Sequence

Length

Mass (Da)

Tools

Q6XS92-1 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 259D2251DA78749E
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111

12,829

        10         20         30         40         50         60 
MLNLFVAVIM DNFEYLTRDS SILGPHHLDE FIRVWAEYDP AACCRIHYKD MYSLLRCIAP 

        70         80         90        100        110 
PVGLGKNCPR RLAYKRLVRM NMPISNEDMT VHFTSTLMAL IRTALEIKLA P

References

[1]	"Cell-specific alternative splicing increases calcium channel current density in the pain pathway." Bell T.J., Thaler C., Castiglioni A.J., Helton T.D., Lipscombe D. Neuron 41:127-138(2004) [PubMed: 14715140] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAO53230.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY211499 Genomic DNA. Translation: AAO53228.1. AY211500 mRNA. Translation: AAO53230.1.
IPI	IPI00454370.
UniGene	Rn.85880
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q6XS92.
Genome annotation databases
Ensembl	ENSRNOT00000040510; ENSRNOP00000045615; ENSRNOG00000004560; Rattus norvegicus. [Genome view]
Phylogenomic databases
HOVERGEN	Q6XS92.
Gene expression databases
ArrayExpress	Q6XS92.
Genevestigator	Q6XS92.
Family and domain databases
InterPro	IPR005447. VDCC_N_a1su. [Graphical view]
PANTHER	PTHR10037:SF58. NVDCCAlpha1. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q6XS92_RAT

Accession

Primary (citable) accession number: Q6XS92

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	January 19, 2010
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information