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Protein
Submitted name:

Transcription factor IIA large subunit-1

Gene

gtf2a1

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor IIA large subunit-1Imported
Gene namesi
Name:gtf2a1Imported
Synonyms:TFIIAa/b-1Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-6255453. gtf2a1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliQ6XPY2.
SMRiQ6XPY2. Positions 12-53, 324-370.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG052771.
KOiK03122.

Family and domain databases

CDDicd07976. TFIIA_alpha_beta_like. 2 hits.
Gene3Di1.10.287.100. 1 hit.
2.30.18.10. 1 hit.
InterProiIPR009083. TFIIA_a-hlx.
IPR004855. TFIIA_asu/bsu.
IPR013028. TFIIA_asu_N.
IPR009088. TFIIA_b-brl.
[Graphical view]
PANTHERiPTHR12694. PTHR12694. 1 hit.
PfamiPF03153. TFIIA. 2 hits.
[Graphical view]
SMARTiSM01371. TFIIA. 1 hit.
[Graphical view]
SUPFAMiSSF47396. SSF47396. 1 hit.
SSF50784. SSF50784. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6XPY2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASAASANAN PVPKLYRSVI GDVINDVREI FLDEGVGEQV LMELKTLWES
60 70 80 90 100
KLMQSKAVDG FHTEEQQLLL QAQQQQQQQQ QHSQHHRVQQ HPQQQQAASH
110 120 130 140 150
QTQQVLIPAT HQAQQQQVLV QESKMIHHMT PQGMSAATTL ALPAGVTPVQ
160 170 180 190 200
QLITNSGQLL QVVRAANGAQ YLIQPQQSMV LQQQVIPQMQ QGGVQAPVIQ
210 220 230 240 250
QVLTPMPGGL SQQTGVIIQP QQILFTGNKT QVIPNTMSAP QAPIQGQLTV
260 270 280 290 300
TSQQQQQGQQ QAPLVLQVDG AGDTSSEEDE DEDEDYDDEE EEDKEKDGED
310 320 330 340 350
GQVEEEPLNS EDDVSDEEGQ ELFDTENVVV CQYDKIHRSK NKWKFHLKDG
360 370
IMNLNGRDFV FSKAIGDAEW
Length:370
Mass (Da):41,140
Last modified:July 5, 2004 - v1
Checksum:i53D2031BF16A0D64
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY218797 mRNA. Translation: AAP44971.1.
RefSeqiNP_001082753.1. NM_001089284.1.
UniGeneiXl.28611.

Genome annotation databases

GeneIDi398704.
KEGGixla:398704.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY218797 mRNA. Translation: AAP44971.1.
RefSeqiNP_001082753.1. NM_001089284.1.
UniGeneiXl.28611.

3D structure databases

ProteinModelPortaliQ6XPY2.
SMRiQ6XPY2. Positions 12-53, 324-370.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi398704.
KEGGixla:398704.

Organism-specific databases

CTDi398704.
XenbaseiXB-GENE-6255453. gtf2a1.

Phylogenomic databases

HOVERGENiHBG052771.
KOiK03122.

Family and domain databases

CDDicd07976. TFIIA_alpha_beta_like. 2 hits.
Gene3Di1.10.287.100. 1 hit.
2.30.18.10. 1 hit.
InterProiIPR009083. TFIIA_a-hlx.
IPR004855. TFIIA_asu/bsu.
IPR013028. TFIIA_asu_N.
IPR009088. TFIIA_b-brl.
[Graphical view]
PANTHERiPTHR12694. PTHR12694. 1 hit.
PfamiPF03153. TFIIA. 2 hits.
[Graphical view]
SMARTiSM01371. TFIIA. 1 hit.
[Graphical view]
SUPFAMiSSF47396. SSF47396. 1 hit.
SSF50784. SSF50784. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ6XPY2_XENLA
AccessioniPrimary (citable) accession number: Q6XPY2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: September 7, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.