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Protein

Glycophorin-C

Gene

Gypc

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Glycophorin-C
Alternative name(s):
CD_antigen: CD236
Gene namesi
Name:Gypc
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 18

Organism-specific databases

RGDi1310295. Gypc.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 25ExtracellularSequence analysisAdd BLAST25
Transmembranei26 – 46Helical; Signal-anchor for type III membrane proteinSequence analysisAdd BLAST21
Topological domaini47 – 95CytoplasmicSequence analysisAdd BLAST49

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003784551 – 95Glycophorin-CAdd BLAST95

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei71PhosphoserineBy similarity1
Modified residuei78PhosphoserineCombined sources1
Modified residuei89PhosphoserineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ6XFR6.
PRIDEiQ6XFR6.

PTM databases

iPTMnetiQ6XFR6.
PhosphoSitePlusiQ6XFR6.

Expressioni

Gene expression databases

BgeeiENSRNOG00000029939.
GenevisibleiQ6XFR6. RN.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000049537.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycophorin-C family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410J2G2. Eukaryota.
ENOG410YT9G. LUCA.
GeneTreeiENSGT00510000049102.
HOGENOMiHOG000112742.
InParanoidiQ6XFR6.
KOiK06576.
OMAiLRYMYRH.
OrthoDBiEOG091G1481.
PhylomeDBiQ6XFR6.
TreeFamiTF337016.

Family and domain databases

InterProiView protein in InterPro
IPR003585. Neurexin-like.
SMARTiView protein in SMART
SM00294. 4.1m. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6XFR6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPVRTPPP ERLEPNPGMS YAVMEIAIIA AVITAVALVL VCLLFLMLRY
60 70 80 90
LYRHKGTYYT NEAKGTEFAE SADAALQSDP ALQDAGDTSK KEYFI
Length:95
Mass (Da):10,443
Last modified:July 5, 2004 - v1
Checksum:i6917EF24507EC340
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY234182 mRNA. Translation: AAP70023.1.
CH473974 Genomic DNA. Translation: EDL76190.1.
BC103641 mRNA. Translation: AAI03642.1.
RefSeqiNP_001013251.1. NM_001013233.1.
UniGeneiRn.7693.

Genome annotation databases

EnsembliENSRNOT00000046369; ENSRNOP00000049537; ENSRNOG00000029939.
GeneIDi364837.
KEGGirno:364837.
UCSCiRGD:1310295. rat.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiGLPC_RAT
AccessioniPrimary (citable) accession number: Q6XFR6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: July 5, 2004
Last modified: June 7, 2017
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families