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Q6XDK7

- VP2_SVM10

UniProt

Q6XDK7 - VP2_SVM10

Protein

Protein VP2

Gene

ORF2

Organism
Sapporo virus (isolate GII/Human/Thailand/Mc10/2000) (Hu/SaV/Mc10/2000/Thailand)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.By similarity

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein VP2
    Alternative name(s):
    Minor capsid protein
    Gene namesi
    ORF Names:ORF2
    OrganismiSapporo virus (isolate GII/Human/Thailand/Mc10/2000) (Hu/SaV/Mc10/2000/Thailand)
    Taxonomic identifieri234601 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
    Virus hostiHomo sapiens (Human) [TaxID: 9606]

    Subcellular locationi

    Virion. Host cytoplasm By similarity

    GO - Cellular componenti

    1. host cell cytoplasm Source: UniProtKB-SubCell
    2. virion Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Host cytoplasm, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 166166Protein VP2PRO_0000342118Add
    BLAST

    Interactioni

    Subunit structurei

    May interact with capsid protein.By similarity

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the vesivirus VP2 protein family.Curated

    Family and domain databases

    InterProiIPR008437. Minor_structural_calicivir.
    [Graphical view]
    PfamiPF05752. Calici_MSP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6XDK7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSWFTGASLA AGSLVDMAGT ISSIVAQQRQ IDLMAEANRI QADWVRRQEA    50
    LQIRGQDISR DLAVNGTAQR VESLVNAGFT PVDARRLAGG TETVSYGLLD 100
    RPILQRGILS GITETRHLQA MQGALSAFKN GASYGAPPAP SGFVNPNYQP 150
    SPPRLKLGPR PPSTNV 166
    Length:166
    Mass (Da):17,697
    Last modified:July 5, 2004 - v1
    Checksum:iE2E9286065CF0AE6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY237420 mRNA. Translation: AAQ17059.2.
    RefSeqiYP_022763.1. NC_010624.1.

    Genome annotation databases

    GeneIDi2943312.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY237420 mRNA. Translation: AAQ17059.2 .
    RefSeqi YP_022763.1. NC_010624.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 2943312.

    Family and domain databases

    InterProi IPR008437. Minor_structural_calicivir.
    [Graphical view ]
    Pfami PF05752. Calici_MSP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiVP2_SVM10
    AccessioniPrimary (citable) accession number: Q6XDK7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 1, 2008
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3