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Q6XDK7 (VP2_SVM10) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene names
ORF Names:ORF2
OrganismSapporo virus (isolate GII/Human/Thailand/Mc10/2000) (Hu/SaV/Mc10/2000/Thailand)
Taxonomic identifier234601 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length166 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Subunit structure

May interact with capsid protein By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

Sequence similarities

Belongs to the vesivirus VP2 protein family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 166166Protein VP2
PRO_0000342118

Sequences

Sequence LengthMass (Da)Tools
Q6XDK7 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: E2E9286065CF0AE6

FASTA16617,697
        10         20         30         40         50         60 
MSWFTGASLA AGSLVDMAGT ISSIVAQQRQ IDLMAEANRI QADWVRRQEA LQIRGQDISR 

        70         80         90        100        110        120 
DLAVNGTAQR VESLVNAGFT PVDARRLAGG TETVSYGLLD RPILQRGILS GITETRHLQA 

       130        140        150        160 
MQGALSAFKN GASYGAPPAP SGFVNPNYQP SPPRLKLGPR PPSTNV 

« Hide

References

[1]"Proteolytic processing of sapovirus ORF1 polyprotein."
Oka T., Katayama K., Ogawa S., Hansman G.S., Kageyama T., Ushijima H., Miyamura T., Takeda N.
J. Virol. 79:7283-7290(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY237420 mRNA. Translation: AAQ17059.2.
RefSeqYP_022763.1. NC_010624.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID2943312.

Family and domain databases

InterProIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamPF05752. Calici_MSP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVP2_SVM10
AccessionPrimary (citable) accession number: Q6XDK7
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: July 5, 2004
Last modified: May 29, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families