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Q6XDK7

- VP2_SVM10

UniProt

Q6XDK7 - VP2_SVM10

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Protein
Protein VP2
Gene
ORF2
Organism
Sapporo virus (isolate GII/Human/Thailand/Mc10/2000) (Hu/SaV/Mc10/2000/Thailand)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene namesi
ORF Names:ORF2
OrganismiSapporo virus (isolate GII/Human/Thailand/Mc10/2000) (Hu/SaV/Mc10/2000/Thailand)
Taxonomic identifieri234601 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]

Subcellular locationi

Virion. Host cytoplasm By similarity

GO - Cellular componenti

  1. host cell cytoplasm Source: UniProtKB-SubCell
  2. virion Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Host cytoplasm, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 166166Protein VP2
PRO_0000342118Add
BLAST

Interactioni

Subunit structurei

May interact with capsid protein By similarity.

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamiPF05752. Calici_MSP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6XDK7-1 [UniParc]FASTAAdd to Basket

« Hide

MSWFTGASLA AGSLVDMAGT ISSIVAQQRQ IDLMAEANRI QADWVRRQEA    50
LQIRGQDISR DLAVNGTAQR VESLVNAGFT PVDARRLAGG TETVSYGLLD 100
RPILQRGILS GITETRHLQA MQGALSAFKN GASYGAPPAP SGFVNPNYQP 150
SPPRLKLGPR PPSTNV 166
Length:166
Mass (Da):17,697
Last modified:July 5, 2004 - v1
Checksum:iE2E9286065CF0AE6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY237420 mRNA. Translation: AAQ17059.2.
RefSeqiYP_022763.1. NC_010624.1.

Genome annotation databases

GeneIDi2943312.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY237420 mRNA. Translation: AAQ17059.2 .
RefSeqi YP_022763.1. NC_010624.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 2943312.

Family and domain databases

InterProi IPR008437. Minor_structural_calicivir.
[Graphical view ]
Pfami PF05752. Calici_MSP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiVP2_SVM10
AccessioniPrimary (citable) accession number: Q6XDK7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: July 5, 2004
Last modified: May 29, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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