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Protein
Submitted name:

New antigen receptor variable domain

Gene
N/A
Organism
Orectolobus maculatus (spotted wobbegong)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
New antigen receptor variable domainImported
OrganismiOrectolobus maculatus (spotted wobbegong)Imported
Taxonomic identifieri168098 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataChondrichthyesElasmobranchiiGaleomorphiiGaleoideaOrectolobiformesOrectolobidaeOrectolobus

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi22 ↔ 83Combined sources

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VESX-ray2.18A/B1-113[»]
2Z8VX-ray2.35C/D1-113[»]
2Z8WX-ray2.45C/D1-113[»]
3MOQX-ray2.05A/B/C/D1-87[»]
A/B/C/D102-113[»]
ProteinModelPortaliQ6X1E6.
SMRiQ6X1E6.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6X1E6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 85Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST85

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
IPR013106. Ig_V-set.
[Graphical view]
PfamiPF07686. V-set. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 1 hit.
SM00406. IGv. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q6X1E6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
AWVDQTPRTA TKETGESLTI NCVLRDASFE LKDTGWYRTK LGSTNEQSIS
60 70 80 90 100
IGGRYVETVN KGSKSFSLRI SDLRVEDSGT YKCQAFYSLP LGDYNYSLLF
110
RGEKGAGTAL TVK
Length:113
Mass (Da):12,517
Last modified:July 5, 2004 - v1
Checksum:i87813D133624E0F8
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei113Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY261682 mRNA. Translation: AAP86762.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY261682 mRNA. Translation: AAP86762.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VESX-ray2.18A/B1-113[»]
2Z8VX-ray2.35C/D1-113[»]
2Z8WX-ray2.45C/D1-113[»]
3MOQX-ray2.05A/B/C/D1-87[»]
A/B/C/D102-113[»]
ProteinModelPortaliQ6X1E6.
SMRiQ6X1E6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ6X1E6.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
IPR013106. Ig_V-set.
[Graphical view]
PfamiPF07686. V-set. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 1 hit.
SM00406. IGv. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ6X1E6_9CHON
AccessioniPrimary (citable) accession number: Q6X1E6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: November 2, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.