Q6WRI0 (IGS10_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 83.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Immunoglobulin superfamily member 10 Short name=IgSF10 Alternative name(s): Calvaria mechanical force protein 608 Short name=CMF608 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 2623 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | May be involved in the maintenance of osteochondroprogenitor cells pool By similarity. |
| Subcellular location | Secreted Potential. |
| Sequence similarities | Contains 12 Ig-like C2-type (immunoglobulin-like) domains. Contains 6 LRR (leucine-rich) repeats. Contains 1 LRRCT domain. Contains 1 LRRNT domain. |
| Sequence caution | The sequence BAC05429.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Differentiation Osteogenesis |
| Cellular component | Secreted |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Immunoglobulin domain Leucine-rich repeat Repeat Signal |
| Molecular function | Developmental protein |
| PTM | Disulfide bond Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | cell differentiation Inferred from electronic annotation. Source: UniProtKB-KW multicellular organismal developmentInferred from electronic annotation. Source: UniProtKB-KW ossificationInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | extracellular region Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q6WRI0-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q6WRI0-2) The sequence of this isoform differs from the canonical sequence as follows: 1-1973: Missing. 1974-1987: MWRLPSKAVVDQQH → MVESVRLENQPCDL | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q6WRI0-3) The sequence of this isoform differs from the canonical sequence as follows: 1-2021: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 28 | 28 | Potential | ||||||||
| Chain | 29 – 2623 | 2595 | Immunoglobulin superfamily member 10 | PRO_0000286817 | |||||||
Regions | |||||||||||
| Domain | 29 – 56 | 28 | LRRNT | ||||||||
| Repeat | 58 – 79 | 22 | LRR 1 | ||||||||
| Repeat | 82 – 103 | 22 | LRR 2 | ||||||||
| Repeat | 106 – 127 | 22 | LRR 3 | ||||||||
| Repeat | 130 – 151 | 22 | LRR 4 | ||||||||
| Repeat | 154 – 175 | 22 | LRR 5 | ||||||||
| Repeat | 186 – 207 | 22 | LRR 6 | ||||||||
| Domain | 219 – 281 | 63 | LRRCT | ||||||||
| Domain | 461 – 567 | 107 | Ig-like C2-type 1 | ||||||||
| Domain | 571 – 661 | 91 | Ig-like C2-type 2 | ||||||||
| Domain | 1648 – 1739 | 92 | Ig-like C2-type 3 | ||||||||
| Domain | 1745 – 1836 | 92 | Ig-like C2-type 4 | ||||||||
| Domain | 1841 – 1933 | 93 | Ig-like C2-type 5 | ||||||||
| Domain | 1941 – 2034 | 94 | Ig-like C2-type 6 | ||||||||
| Domain | 2037 – 2135 | 99 | Ig-like C2-type 7 | ||||||||
| Domain | 2141 – 2229 | 89 | Ig-like C2-type 8 | ||||||||
| Domain | 2234 – 2331 | 98 | Ig-like C2-type 9 | ||||||||
| Domain | 2337 – 2427 | 91 | Ig-like C2-type 10 | ||||||||
| Domain | 2432 – 2518 | 87 | Ig-like C2-type 11 | ||||||||
| Domain | 2528 – 2623 | 96 | Ig-like C2-type 12 | ||||||||
Amino acid modifications | |||||||||||
| Glycosylation | 319 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 439 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 627 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 774 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 999 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1899 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1962 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2101 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 497 ↔ 551 | By similarity | |||||||||
| Disulfide bond | 595 ↔ 645 | By similarity | |||||||||
| Disulfide bond | 1670 ↔ 1723 | By similarity | |||||||||
| Disulfide bond | 1767 ↔ 1820 | By similarity | |||||||||
| Disulfide bond | 1864 ↔ 1917 | By similarity | |||||||||
| Disulfide bond | 1963 ↔ 2016 | By similarity | |||||||||
| Disulfide bond | 2060 ↔ 2119 | By similarity | |||||||||
| Disulfide bond | 2163 ↔ 2213 | By similarity | |||||||||
| Disulfide bond | 2261 ↔ 2313 | By similarity | |||||||||
| Disulfide bond | 2359 ↔ 2411 | By similarity | |||||||||
| Disulfide bond | 2454 ↔ 2506 | By similarity | |||||||||
| Disulfide bond | 2550 ↔ 2605 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 1 – 2021 | 2021 | Missing in isoform 3. | VSP_025194 | |||||||
| Alternative sequence | 1 – 1973 | 1973 | Missing in isoform 2. | VSP_025195 | |||||||
| Alternative sequence | 1974 – 1987 | 14 | MWRLP…VDQQH → MVESVRLENQPCDL in isoform 2. | VSP_025196 | |||||||
| Natural variant | 124 | 1 | T → I. Corresponds to variant rs35953658 [ dbSNP | Ensembl ]. | VAR_032179 | |||||||
| Natural variant | 150 | 1 | Y → D. Corresponds to variant rs7619322 [ dbSNP | Ensembl ]. | VAR_032180 | |||||||
| Natural variant | 571 | 1 | P → S. Corresponds to variant rs17204557 [ dbSNP | Ensembl ]. | VAR_032181 | |||||||
| Natural variant | 795 | 1 | D → N. Corresponds to variant rs58583961 [ dbSNP | Ensembl ]. | VAR_061313 | |||||||
| Natural variant | 1199 | 1 | S → A. Corresponds to variant rs16863403 [ dbSNP | Ensembl ]. | VAR_032182 | |||||||
| Natural variant | 1370 | 1 | T → I. Corresponds to variant rs34933248 [ dbSNP | Ensembl ]. | VAR_032183 | |||||||
| Natural variant | 1875 | 1 | Y → H. Corresponds to variant rs12487205 [ dbSNP | Ensembl ]. | VAR_032184 | |||||||
| Natural variant | 2476 | 1 | R → W. Corresponds to variant rs3732775 [ dbSNP | Ensembl ]. | VAR_032185 | |||||||
| Natural variant | 2579 | 1 | H → Y. Corresponds to variant rs7624011 [ dbSNP | Ensembl ]. | VAR_032186 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 2243 | 1 | N → S in AAH31063. Ref.3 | ||||||||
Sequences
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References
| [1] | "CMF608 -- a novel mechanical strain-induced bone-specific protein expressed in early osteochondroprogenitor cells." Segev O., Samach A., Faerman A., Kalinski H., Beiman M., Gelfand A., Turam H., Boguslavsky S., Moshayov A., Gottlieb H., Kazanov E., Nevo Z., Robinson D., Skaliter R., Einat P., Binderman I., Feinstein E. Bone 34:246-260(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2187-2623 (ISOFORM 1). Tissue: Testis. |
| [3] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Testis. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY273815 mRNA. Translation: AAQ16156.1. AK093069 mRNA. Translation: BAC04042.1. AK098838 mRNA. Translation: BAC05429.1. Different initiation. BC031063 mRNA. Translation: AAH31063.1. |
| IPI | IPI00183913. IPI00478293. IPI00795608. |
| RefSeq | NP_001171616.1. NM_001178145.1. NP_001171617.1. NM_001178146.1. NP_849144.2. NM_178822.4. |
| UniGene | Hs.741587. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1OZN based on UniProtKB Q9BZR6. |
| ProteinModelPortal | Q6WRI0. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000282466. |
PTM databases | |
| PhosphoSite | Q6WRI0. |
Polymorphism databases | |
| DMDM | 74749492. |
Proteomic databases | |
| PaxDb | Q6WRI0. |
| PRIDE | Q6WRI0. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000282466; ENSP00000282466; ENSG00000152580. |
| GeneID | 285313. |
| KEGG | hsa:285313. |
| UCSC | uc011bob.2. human. uc011boc.2. human. uc011bod.2. human. |
Organism-specific databases | |
| CTD | 285313. |
| GeneCards | GC03M151143. |
| HGNC | HGNC:26384. IGSF10. |
| HPA | HPA012921. |
| neXtProt | NX_Q6WRI0. |
| PharmGKB | PA134900760. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG239806. |
| HOGENOM | HOG000113014. |
| HOVERGEN | HBG107995. |
| InParanoid | Q6WRI0. |
| OMA | PYVSEDG. |
| OrthoDB | EOG45MN4F. |
| PhylomeDB | Q6WRI0. |
Gene expression databases | |
| ArrayExpress | Q6WRI0. |
| Bgee | Q6WRI0. |
| CleanEx | HS_IGSF10. |
| Genevestigator | Q6WRI0. |
Family and domain databases | |
| Gene3D | 2.60.40.10. 12 hits. |
| InterPro | IPR000483. Cys-rich_flank_reg_C. IPR007110. Ig-like_dom. IPR013783. Ig-like_fold. IPR013098. Ig_I-set. IPR003599. Ig_sub. IPR003598. Ig_sub2. IPR003591. Leu-rich_rpt_typical-subtyp. IPR000372. LRR-contain_N. [Graphical view] |
| Pfam | PF07679. I-set. 12 hits. [Graphical view] |
| SMART | SM00409. IG. 2 hits. SM00408. IGc2. 10 hits. SM00369. LRR_TYP. 2 hits. SM00082. LRRCT. 1 hit. SM00013. LRRNT. 1 hit. [Graphical view] |
| PROSITE | PS50835. IG_LIKE. 12 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 285313. |
| NextBio | 95425. |
Entry information
| Entry name | IGS10_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q6WRI0 Secondary accession number(s): Q86YJ9, Q8N772, Q8NA84 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with
