Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q6VYI5

- Q6VYI5_MOUSE

UniProt

Q6VYI5 - Q6VYI5_MOUSE

Protein
Submitted name:

TAR DNA-binding protein 43

Gene

Tardbp

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 87 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro
    3. protein binding Source: MGI
    4. RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription Source: MGI

    GO - Biological processi

    1. positive regulation of transcription from RNA polymerase II promoter Source: GOC

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    TAR DNA-binding protein 43Imported
    Submitted name:
    TARDBP S8Imported
    Gene namesi
    Name:TardbpImported
    Synonyms:TARDBPImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 4

    Organism-specific databases

    MGIiMGI:2387629. Tardbp.

    Expressioni

    Gene expression databases

    GenevestigatoriQ6VYI5.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00730000110584.
    HOGENOMiHOG000254792.
    HOVERGENiHBG058671.

    Family and domain databases

    Gene3Di3.30.70.330. 2 hits.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    PfamiPF00076. RRM_1. 2 hits.
    [Graphical view]
    SMARTiSM00360. RRM. 2 hits.
    [Graphical view]
    PROSITEiPS50102. RRM. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6VYI5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSEYIRVTED ENDEPIEIPS EDDGTVLLST VTAQFPGACG LRYRNPVSQC    50
    MRGVRLVEGI LHAPDAGWGN LVYVVNYPKD NKRKMDETDA SSAVKVKRAV 100
    QKTSDLIVLG LPWKTTEQDL KDYFSTFGEV LMVQVKKDLK TGHSKGFGFV 150
    RFTEYETQVK VMSQRHMIDG RWCDCKLPNS KQSPDEPLRS RKVFVGRCTE 200
    DMTAEELQQF FCQYGEVVDV FIPKPFRAFA FVTFADDKVA QSLCGEDLII 250
    KGISVHISNA EPKHNSNRQL ERSGRFGGNP GILLSTCFLI QEFVITLHRL 300
    RL 302
    Length:302
    Mass (Da):34,197
    Last modified:July 5, 2004 - v1
    Checksum:iD738F23CB5BA3805
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL606969 Genomic DNA. No translation available.
    AY319515 mRNA. Translation: AAP92690.1.
    RefSeqiNP_001008546.1. NM_001008546.2.
    UniGeneiMm.22453.
    Mm.378962.

    Genome annotation databases

    EnsembliENSMUST00000105700; ENSMUSP00000101325; ENSMUSG00000041459.
    ENSMUST00000105702; ENSMUSP00000101327; ENSMUSG00000041459.
    GeneIDi230908.
    KEGGimmu:230908.
    UCSCiuc008vvd.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL606969 Genomic DNA. No translation available.
    AY319515 mRNA. Translation: AAP92690.1 .
    RefSeqi NP_001008546.1. NM_001008546.2.
    UniGenei Mm.22453.
    Mm.378962.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000105700 ; ENSMUSP00000101325 ; ENSMUSG00000041459 .
    ENSMUST00000105702 ; ENSMUSP00000101327 ; ENSMUSG00000041459 .
    GeneIDi 230908.
    KEGGi mmu:230908.
    UCSCi uc008vvd.1. mouse.

    Organism-specific databases

    CTDi 23435.
    MGIi MGI:2387629. Tardbp.

    Phylogenomic databases

    GeneTreei ENSGT00730000110584.
    HOGENOMi HOG000254792.
    HOVERGENi HBG058671.

    Miscellaneous databases

    NextBioi 380280.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q6VYI5.

    Family and domain databases

    Gene3Di 3.30.70.330. 2 hits.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    Pfami PF00076. RRM_1. 2 hits.
    [Graphical view ]
    SMARTi SM00360. RRM. 2 hits.
    [Graphical view ]
    PROSITEi PS50102. RRM. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Structural and Functional Aspects of the Eukaryoyic TDP gene Family."
      Shen J.C.K., Wang I.-F., Wang H.-Y.
      Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    3. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiQ6VYI5_MOUSE
    AccessioniPrimary (citable) accession number: Q6VYI5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2004
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 87 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3