Q6VYI5 (Q6VYI5_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
TAR DNA-binding protein 43 Ensembl ENSMUSP00000101325 Ensembl ENSMUSP00000101327

Submitted name:
TARDBP S8 EMBL AAP92690.1

Gene names

Name:	Tardbp Ensembl ENSMUSP00000101325 Ensembl ENSMUSP00000101327 MGI 2387629
Synonyms:	TARDBP EMBL AAP92690.1

Organism

Mus musculus (Mouse) [Reference proteome]

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	302 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	nucleic acid binding Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6VYI5 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: D738F23CB5BA3805	FASTA	302	34,197
	10 20 30 40 50 60 MSEYIRVTED ENDEPIEIPS EDDGTVLLST VTAQFPGACG LRYRNPVSQC MRGVRLVEGI 70 80 90 100 110 120 LHAPDAGWGN LVYVVNYPKD NKRKMDETDA SSAVKVKRAV QKTSDLIVLG LPWKTTEQDL 130 140 150 160 170 180 KDYFSTFGEV LMVQVKKDLK TGHSKGFGFV RFTEYETQVK VMSQRHMIDG RWCDCKLPNS 190 200 210 220 230 240 KQSPDEPLRS RKVFVGRCTE DMTAEELQQF FCQYGEVVDV FIPKPFRAFA FVTFADDKVA 250 260 270 280 290 300 QSLCGEDLII KGISVHISNA EPKHNSNRQL ERSGRFGGNP GILLSTCFLI QEFVITLHRL RL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structural and Functional Aspects of the Eukaryoyic TDP gene Family." Shen J.C.K., Wang I.-F., Wang H.-Y. Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000101325 Ensembl ENSMUSP00000101327.
[3]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000101325 Ensembl ENSMUSP00000101327.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL606969 Genomic DNA. No translation available. AY319515 mRNA. Translation: AAP92690.1.
IPI	IPI00459625.
RefSeq	NP_001008546.1. NM_001008546.2.
UniGene	Mm.22453. Mm.378962.
3D structure databases
SMR	Q6VYI5. Positions 55-261.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000105700; ENSMUSP00000101325; ENSMUSG00000041459. ENSMUST00000105702; ENSMUSP00000101327; ENSMUSG00000041459.
GeneID	230908.
KEGG	mmu:230908.
UCSC	uc008vvd.1. mouse.
Organism-specific databases
CTD	23435.
MGI	MGI:2387629. Tardbp.
Phylogenomic databases
GeneTree	ENSGT00570000079202.
HOGENOM	HOG000254792.
HOVERGEN	HBG058671.
Gene expression databases
Genevestigator	Q6VYI5.
Family and domain databases
Gene3D	3.30.70.330. 2 hits.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. [Graphical view]
Pfam	PF00076. RRM_1. 1 hit. [Graphical view]
SMART	SM00360. RRM. 2 hits. [Graphical view]
PROSITE	PS50102. RRM. 2 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	380280.
SOURCE	Search...

Entry information

Entry name

Q6VYI5_MOUSE

Accession

Primary (citable) accession number: Q6VYI5

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	May 1, 2013
This is version 80 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)