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Protein
Submitted name:

TAR DNA-binding protein 43

Gene

Tardbp

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. double-stranded DNA binding Source: MGI
  2. identical protein binding Source: MGI
  3. mRNA 3'-UTR binding Source: MGI
  4. nucleotide binding Source: InterPro
  5. poly(A) RNA binding Source: MGI
  6. RNA binding Source: MGI
  7. RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription Source: MGI

GO - Biological processi

  1. 3'-UTR-mediated mRNA stabilization Source: MGI
  2. negative regulation by host of viral transcription Source: MGI
  3. positive regulation of transcription from RNA polymerase II promoter Source: GOC
  4. RNA splicing Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
TAR DNA-binding protein 43Imported
Submitted name:
TARDBP S9Imported
Gene namesi
Name:TardbpImported
Synonyms:TARDBPImported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 4

Organism-specific databases

MGIiMGI:2387629. Tardbp.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ6VYI4.

Structurei

3D structure databases

ProteinModelPortaliQ6VYI4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00730000110584.
HOVERGENiHBG058671.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6VYI4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSEYIRVTED ENDEPIEIPS EDDGTVLLST VTAQFPGACG LRYRNPVSQC
60 70 80 90 100
MRGVRLVEGI LHAPDAGWGN LVYVVNYPKD NKRKMDETDA SSAVKVKRAV
110 120 130 140 150
QKTSDLIVLG LPWKTTEQDL KDYFSTFGEV LMVQVKKDLK TGHSKGFGFV
160 170 180 190 200
RFTEYETQVK VMSQRHMIDG RWCDCKLPNS KQSPDEPLRS RKVFVGRCTE
210 220 230 240 250
DMTAEELQQF FCQYGEVVDV FIPKPFRAFA FVTFADDKVA QSLCGEDLII
260 270 280 290 300
KGISVHISNA EPKHNSNRQL ERSGRFGGNP GGFGNQVHLI SNVYGRSTSL

KVVL
Length:304
Mass (Da):34,157
Last modified:July 5, 2004 - v1
Checksum:i673D0F3BFD53E888
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606969 Genomic DNA. No translation available.
AY319516 mRNA. Translation: AAP92691.1.
RefSeqiNP_001008545.1. NM_001008545.2.
UniGeneiMm.22453.
Mm.378962.

Genome annotation databases

EnsembliENSMUST00000095719; ENSMUSP00000093386; ENSMUSG00000041459.
ENSMUST00000172073; ENSMUSP00000130963; ENSMUSG00000041459.
GeneIDi230908.
KEGGimmu:230908.
UCSCiuc008vve.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606969 Genomic DNA. No translation available.
AY319516 mRNA. Translation: AAP92691.1.
RefSeqiNP_001008545.1. NM_001008545.2.
UniGeneiMm.22453.
Mm.378962.

3D structure databases

ProteinModelPortaliQ6VYI4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000095719; ENSMUSP00000093386; ENSMUSG00000041459.
ENSMUST00000172073; ENSMUSP00000130963; ENSMUSG00000041459.
GeneIDi230908.
KEGGimmu:230908.
UCSCiuc008vve.1. mouse.

Organism-specific databases

CTDi23435.
MGIiMGI:2387629. Tardbp.

Phylogenomic databases

GeneTreeiENSGT00730000110584.
HOVERGENiHBG058671.

Miscellaneous databases

ChiTaRSiTardbp. mouse.
NextBioi380280.
SOURCEiSearch...

Gene expression databases

GenevestigatoriQ6VYI4.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural and Functional Aspects of the Eukaryoyic TDP gene Family."
    Shen J.C.K., Wang I.-F., Wang H.-Y.
    Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ6VYI4_MOUSE
AccessioniPrimary (citable) accession number: Q6VYI4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 4, 2015
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.