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Protein

Aftiphilin

Gene

AFTPH

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in membrane trafficking.

GO - Molecular functioni

  • clathrin binding Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Aftiphilin
Gene namesi
Name:AFTPH
Synonyms:AFTH
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 2

Organism-specific databases

HGNCiHGNC:25951. AFTPH.

Subcellular locationi

GO - Cellular componenti

  • AP-1 adaptor complex Source: UniProtKB
  • cytoplasm Source: HPA
  • cytosol Source: UniProtKB
  • Golgi apparatus Source: HPA
  • intracellular membrane-bounded organelle Source: HPA
  • nucleoplasm Source: HPA
  • nucleus Source: HPA
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA145149871.

Polymorphism and mutation databases

BioMutaiAFTPH.
DMDMi62286617.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 937937AftiphilinPRO_0000064488Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei151 – 1511Phosphoserine1 Publication
Modified residuei395 – 3951PhosphoserineBy similarity
Modified residuei518 – 5181Phosphoserine1 Publication
Modified residuei617 – 6171Phosphothreonine2 Publications

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ6ULP2.
PaxDbiQ6ULP2.
PRIDEiQ6ULP2.

PTM databases

PhosphoSiteiQ6ULP2.

Expressioni

Gene expression databases

BgeeiQ6ULP2.
CleanExiHS_AFTPH.
ExpressionAtlasiQ6ULP2. baseline and differential.
GenevisibleiQ6ULP2. HS.

Organism-specific databases

HPAiHPA034990.
HPA034991.

Interactioni

Subunit structurei

Interacts with GGA1, GGA3, AP1G1 and AP1G2 via their GAE domain.1 Publication

Protein-protein interaction databases

BioGridi120169. 5 interactions.
IntActiQ6ULP2. 5 interactions.
MINTiMINT-5005262.
STRINGi9606.ENSP00000238855.

Structurei

3D structure databases

ProteinModelPortaliQ6ULP2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni825 – 8295Clathrin-bindingSequence Analysis

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi28 – 314WXXF motif 1
Motifi432 – 4354WXXF motif 2
Motifi436 – 4383WXXF motif 3 (partial)
Motifi478 – 4814WXXF motif 4

Domaini

The WXXF motifs mediate binding of accessory proteins to the ear-domain of AP-1, GGAs and AP-2 through hydrophobic interactions. Selective binding to the GAE domains of AP-1 or to the alpha-ear domain of AP-2 is tuned by the acidic context surrounding the motif and the properties of the second residue of the motif itself (By similarity).By similarity

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiNOG40359.
GeneTreeiENSGT00390000017835.
HOVERGENiHBG050464.
InParanoidiQ6ULP2.
OMAiETVNPQG.
OrthoDBiEOG779NX4.
PhylomeDBiQ6ULP2.
TreeFamiTF331532.

Family and domain databases

InterProiIPR029205. Clathrin-bd.
[Graphical view]
PfamiPF15045. Clathrin_bdg. 1 hit.
[Graphical view]

Sequences (5)i

Sequence statusi: Complete.

This entry describes 5 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q6ULP2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MEPDIIRMYS SSPPPLDNGA EDDDDDEFGE FGGFSEVSPS GVGFVDFDTP
60 70 80 90 100
DYTRPKEEFV PSNHFMPIHE FSENVDSLTS FKSIKNGNDK DITAELSAPV
110 120 130 140 150
KGQSDVLLST TSKEIISSEM LATSIDGMER PGNLNKVVEQ RQNVGTLESF
160 170 180 190 200
SPGDFRTNMN VVHQNKQLES CNGEKPPCLE ILTNGFAVLE TVNPQGTDDL
210 220 230 240 250
DNVADSKGRK PLSTHSTEYN LDSVPSPAEE FADFATFSKK ERIQLEEIEC
260 270 280 290 300
AVLNDREALT IRENNKINRV NELNSVKEVA LGRSLDNKGD TDGEDQVCVS
310 320 330 340 350
EISIVTNRGF SVEKQGLPTL QQDEFLQSGV QSKAWSLVDS ADNSEAIRRE
360 370 380 390 400
QCKTEEKLDL LTSKCAHLCM DSVKTSDDEV GSPKEESRKF TNFQSPNIDP
410 420 430 440 450
TEENDLDDSL SVKNGDSSND FVTCNDINED DFGDFGDFGS ASGSTPPFVT
460 470 480 490 500
GTQDSMSDAT FEESSEHFPH FSEPGDDFGE FGDINAVSCQ EETILTKSDL
510 520 530 540 550
KQTSDNLSEE CQLARKSSGT GTEPVAKLKN GQEGEIGHFD SVPNIQDDCN
560 570 580 590 600
GFQDSDDFAD FSSAGPSQVV DWNAFEDEQK DSCSWAAFGD QQATESHHRK
610 620 630 640 650
EAWQSHRTDE NIDTPGTPKT HSVPSATSKG AVASGHLQES ATSVQTALLN
660 670 680 690 700
RLERIFEACF PSILVPDAEE EVTSLKHLLE TSTLPIKTRE ALPESGELLD
710 720 730 740 750
VWTELQDIHD AHGLRYQWGG SHSNKKLLSS LGIDTRNILF TGNKKQPVIV
760 770 780 790 800
PMYAAGLGML EPTKEPLKPL SAAEKIASIG QTATMSPDMN TCTSDQFQES
810 820 830 840 850
LPPVQFDWSS SGLTNPLDAS GGSTLLNLDF FGPVDDSSSS SSTTIPGVDP
860 870 880 890 900
ELYELTTSKL EISTSSLKVT DAFARLMSTV EKTSTSTSRK PKREEHLSEE
910 920 930
AIKVIAGLPD LTFMHAKVLM FPATLTPSTS SQEKADG
Length:937
Mass (Da):102,200
Last modified:March 29, 2005 - v2
Checksum:iCC9CF52CE10F2C36
GO
Isoform 2 (identifier: Q6ULP2-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     819-846: Missing.

Show »
Length:909
Mass (Da):99,458
Checksum:iB931F39110FDBB8E
GO
Isoform 3 (identifier: Q6ULP2-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     819-820: AS → GT
     821-937: Missing.

Note: May be due to intron retention. No experimental confirmation available.
Show »
Length:820
Mass (Da):89,720
Checksum:i35A9CF525DDF54AF
GO
Isoform 4 (identifier: Q6ULP2-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     888-888: Missing.

Show »
Length:936
Mass (Da):102,113
Checksum:i7F84B4D6890BCDF7
GO
Isoform 5 (identifier: Q6ULP2-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     819-846: Missing.
     888-888: Missing.

Show »
Length:908
Mass (Da):99,371
Checksum:i028209277B9C75A4
GO

Sequence cautioni

The sequence AAH22247.1 differs from that shown. Reason: Frameshift at position 919. Curated
The sequence BAB13930.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAB14949.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti734 – 7341D → G in BAB13930 (PubMed:14702039).Curated
Sequence conflicti850 – 8501P → L in AAR14726 (PubMed:14665628).Curated
Sequence conflicti895 – 8951E → G in AAH22247 (PubMed:15489334).Curated
Sequence conflicti905 – 9051I → V in AAH47529 (PubMed:15489334).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti233 – 2331D → G.
Corresponds to variant rs35986567 [ dbSNP | Ensembl ].
VAR_056728
Natural varianti301 – 3011E → K.
Corresponds to variant rs3770740 [ dbSNP | Ensembl ].
VAR_056729
Natural varianti550 – 5501N → S.
Corresponds to variant rs3770739 [ dbSNP | Ensembl ].
VAR_056730

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei819 – 84628Missing in isoform 2 and isoform 5. 2 PublicationsVSP_013238Add
BLAST
Alternative sequencei819 – 8202AS → GT in isoform 3. 1 PublicationVSP_013239
Alternative sequencei821 – 937117Missing in isoform 3. 1 PublicationVSP_013240Add
BLAST
Alternative sequencei888 – 8881Missing in isoform 4 and isoform 5. 2 PublicationsVSP_013241

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY367088 mRNA. Translation: AAR14726.1.
AK000087 mRNA. Translation: BAA90936.1.
AK021899 mRNA. Translation: BAB13930.1. Different initiation.
AK024658 mRNA. Translation: BAB14949.1. Different initiation.
AL833962 mRNA. Translation: CAE46209.1.
CH471053 Genomic DNA. Translation: EAW99938.1.
CH471053 Genomic DNA. Translation: EAW99941.1.
BC022247 mRNA. Translation: AAH22247.1. Sequence problems.
BC047529 mRNA. Translation: AAH47529.1.
CCDSiCCDS1878.1. [Q6ULP2-2]
CCDS46303.1. [Q6ULP2-4]
RefSeqiNP_001002243.1. NM_001002243.2. [Q6ULP2-5]
NP_060127.3. NM_017657.4. [Q6ULP2-2]
NP_982261.2. NM_203437.3. [Q6ULP2-4]
XP_005264437.1. XM_005264380.1. [Q6ULP2-1]
UniGeneiHs.655167.

Genome annotation databases

EnsembliENST00000238855; ENSP00000238855; ENSG00000119844. [Q6ULP2-4]
ENST00000238856; ENSP00000238856; ENSG00000119844. [Q6ULP2-2]
ENST00000409933; ENSP00000387071; ENSG00000119844. [Q6ULP2-4]
GeneIDi54812.
KEGGihsa:54812.
UCSCiuc002scz.3. human. [Q6ULP2-4]
uc002sda.3. human. [Q6ULP2-5]
uc002sdb.3. human. [Q6ULP2-2]
uc002sdc.3. human. [Q6ULP2-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY367088 mRNA. Translation: AAR14726.1.
AK000087 mRNA. Translation: BAA90936.1.
AK021899 mRNA. Translation: BAB13930.1. Different initiation.
AK024658 mRNA. Translation: BAB14949.1. Different initiation.
AL833962 mRNA. Translation: CAE46209.1.
CH471053 Genomic DNA. Translation: EAW99938.1.
CH471053 Genomic DNA. Translation: EAW99941.1.
BC022247 mRNA. Translation: AAH22247.1. Sequence problems.
BC047529 mRNA. Translation: AAH47529.1.
CCDSiCCDS1878.1. [Q6ULP2-2]
CCDS46303.1. [Q6ULP2-4]
RefSeqiNP_001002243.1. NM_001002243.2. [Q6ULP2-5]
NP_060127.3. NM_017657.4. [Q6ULP2-2]
NP_982261.2. NM_203437.3. [Q6ULP2-4]
XP_005264437.1. XM_005264380.1. [Q6ULP2-1]
UniGeneiHs.655167.

3D structure databases

ProteinModelPortaliQ6ULP2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi120169. 5 interactions.
IntActiQ6ULP2. 5 interactions.
MINTiMINT-5005262.
STRINGi9606.ENSP00000238855.

PTM databases

PhosphoSiteiQ6ULP2.

Polymorphism and mutation databases

BioMutaiAFTPH.
DMDMi62286617.

Proteomic databases

MaxQBiQ6ULP2.
PaxDbiQ6ULP2.
PRIDEiQ6ULP2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000238855; ENSP00000238855; ENSG00000119844. [Q6ULP2-4]
ENST00000238856; ENSP00000238856; ENSG00000119844. [Q6ULP2-2]
ENST00000409933; ENSP00000387071; ENSG00000119844. [Q6ULP2-4]
GeneIDi54812.
KEGGihsa:54812.
UCSCiuc002scz.3. human. [Q6ULP2-4]
uc002sda.3. human. [Q6ULP2-5]
uc002sdb.3. human. [Q6ULP2-2]
uc002sdc.3. human. [Q6ULP2-1]

Organism-specific databases

CTDi54812.
GeneCardsiGC02P064751.
HGNCiHGNC:25951. AFTPH.
HPAiHPA034990.
HPA034991.
neXtProtiNX_Q6ULP2.
PharmGKBiPA145149871.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG40359.
GeneTreeiENSGT00390000017835.
HOVERGENiHBG050464.
InParanoidiQ6ULP2.
OMAiETVNPQG.
OrthoDBiEOG779NX4.
PhylomeDBiQ6ULP2.
TreeFamiTF331532.

Miscellaneous databases

ChiTaRSiAFTPH. human.
GeneWikiiAFTPH.
GenomeRNAii54812.
NextBioi57537.
PROiQ6ULP2.

Gene expression databases

BgeeiQ6ULP2.
CleanExiHS_AFTPH.
ExpressionAtlasiQ6ULP2. baseline and differential.
GenevisibleiQ6ULP2. HS.

Family and domain databases

InterProiIPR029205. Clathrin-bd.
[Graphical view]
PfamiPF15045. Clathrin_bdg. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Definition of the consensus motif recognized by gamma-adaptin ear domains."
    Mattera R., Ritter B., Sidhu S.S., McPherson P.S., Bonifacino J.S.
    J. Biol. Chem. 279:8018-8028(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 4), SUBCELLULAR LOCATION, INTERACTION WITH GGA1; GGA3; AP1G1 AND AP1G2.
    Tissue: Brain.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 347-937 (ISOFORM 1).
    Tissue: Colon and Embryo.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
    Tissue: Amygdala.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 724-937 (ISOFORM 5).
    Tissue: Brain and Lung.
  6. "A probability-based approach for high-throughput protein phosphorylation analysis and site localization."
    Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P.
    Nat. Biotechnol. 24:1285-1292(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-617, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  7. "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
    Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
    Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-617, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Leukemic T-cell.
  8. "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis."
    Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.
    Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-151, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  9. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  10. "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome."
    Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., Ye M., Zou H.
    J. Proteomics 96:253-262(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-518, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.

Entry informationi

Entry nameiAFTIN_HUMAN
AccessioniPrimary (citable) accession number: Q6ULP2
Secondary accession number(s): D6W5E9
, Q6ZM66, Q86VW3, Q8TCF3, Q9H7E3, Q9HAB9, Q9NXS4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2005
Last sequence update: March 29, 2005
Last modified: June 24, 2015
This is version 96 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.