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Protein
Submitted name:

LRRGT00003

Gene

Cyld

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinSAAS annotation

Protein family/group databases

MEROPSiC67.001.

Names & Taxonomyi

Protein namesi
Submitted name:
LRRGT00003Imported
Gene namesi
Name:CyldImported
Synonyms:LOC100362727Imported
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1308346. Cyld.
2324131. LOC100362727.

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiQ6TXJ6.
PRIDEiQ6TXJ6.

PTM databases

PhosphoSiteiQ6TXJ6.

Expressioni

Gene expression databases

GenevestigatoriQ6TXJ6.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000042683.

Structurei

3D structure databases

ProteinModelPortaliQ6TXJ6.
SMRiQ6TXJ6. Positions 258-283, 285-453.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1890.
PhylomeDBiQ6TXJ6.
TreeFamiTF300037.

Family and domain databases

HAMAPiMF_03122. Ribosomal_S3Ae_euk.
InterProiIPR027500. Ribosomal_S1/3_euk.
IPR001593. Ribosomal_S3Ae.
IPR028889. USP_dom.
[Graphical view]
PfamiPF01015. Ribosomal_S3Ae. 1 hit.
[Graphical view]
PROSITEiPS50235. USP_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6TXJ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVRKNQHPT KGGKKGAKKK VVDPFSKKDW YDVKAPAMFN IRSIRKTLVT
60 70 80 90 100
RTQGAKTAPD GLEGRVFEGR LADLQNDEDS FRKVKLNTED VQGKNFHGMD
110 120 130 140 150
LTRDRMCSVV KKWQTTMIEA LVDVKTTDGY LLRLFCVGFT KKYNNQIRKI
160 170 180 190 200
SYSQVYQIQK KMMEIMTREV QTNDLKEVVN KLILGSIGKD IEKVCQSIHP
210 220 230 240 250
LHDVFVRKVK MLKKPKFELG KPMELHGEGG GSHKTTAFGG YLSEVVEENT
260 270 280 290 300
PPKMEKEGLE IMIGKKKGIQ GHYNSCYLDS TLFWQCRICG GLAMYECREC
310 320 330 340 350
YDDPDISAGK IKQFCKTCST QVHLHPRRLN HTYHPVSLPK DLPDWDWRHG
360 370 380 390 400
CIPCQKMELF AVLCIETSHY VAFVKYGKDD SAWLFFDSMA DRDGGQNGFN
410 420 430 440 450
IPQVTPCPEV GEYLKMSLED LHSLDSRRIQ GCARRLLCDA YMCMYQSPTM

SLYK
Length:454
Mass (Da):52,009
Last modified:July 4, 2004 - v1
Checksum:i8828E384B9F8F69F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY383658 mRNA. Translation: AAQ96216.1.
UniGeneiRn.128760.
Rn.168938.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY383658 mRNA. Translation: AAQ96216.1.
UniGeneiRn.128760.
Rn.168938.

3D structure databases

ProteinModelPortaliQ6TXJ6.
SMRiQ6TXJ6. Positions 258-283, 285-453.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000042683.

Protein family/group databases

MEROPSiC67.001.

PTM databases

PhosphoSiteiQ6TXJ6.

Proteomic databases

PaxDbiQ6TXJ6.
PRIDEiQ6TXJ6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

RGDi1308346. Cyld.
2324131. LOC100362727.

Phylogenomic databases

eggNOGiCOG1890.
PhylomeDBiQ6TXJ6.
TreeFamiTF300037.

Gene expression databases

GenevestigatoriQ6TXJ6.

Family and domain databases

HAMAPiMF_03122. Ribosomal_S3Ae_euk.
InterProiIPR027500. Ribosomal_S1/3_euk.
IPR001593. Ribosomal_S3Ae.
IPR028889. USP_dom.
[Graphical view]
PfamiPF01015. Ribosomal_S3Ae. 1 hit.
[Graphical view]
PROSITEiPS50235. USP_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Liver regeneration after PH."
    Xu C.S., Chang C.F., Han H.P., Wang G.P., Chai L.Q., Yuan J.Y., Yang K.J., Zhao L.F., Ma H., Wang L., Wang S.F., Xing X.K., Shen G.M., Shi J.B., Rahman S., Wang Q.N., Zhang J.B.
    Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Sprague-DawleyImported.

Entry informationi

Entry nameiQ6TXJ6_RAT
AccessioniPrimary (citable) accession number: Q6TXJ6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 4, 2004
Last sequence update: July 4, 2004
Last modified: March 31, 2015
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.