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Protein

Rab-like protein 3

Gene

rabl3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi13 – 208GTPBy similarity
Nucleotide bindingi66 – 705GTPBy similarity
Nucleotide bindingi147 – 1504GTPBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Rab-like protein 3
Gene namesi
Name:rabl3
ORF Names:zgc:100876
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 9

Organism-specific databases

ZFINiZDB-GENE-040808-11. rabl3.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 233233Rab-like protein 3PRO_0000312169Add
BLAST

Proteomic databases

PaxDbiQ6TNS7.
PRIDEiQ6TNS7.

Expressioni

Gene expression databases

BgeeiENSDARG00000040959.
ExpressionAtlasiQ6TNS7. differential.

Structurei

3D structure databases

ProteinModelPortaliQ6TNS7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 233233Small GTPase-likeAdd
BLAST

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiENOG410IJY5. Eukaryota.
ENOG410YR8H. LUCA.
GeneTreeiENSGT00390000007467.
HOGENOMiHOG000006785.
HOVERGENiHBG108392.
InParanoidiQ6TNS7.
KOiK07933.
OMAiHKNTRSV.
OrthoDBiEOG091G0GUK.
PhylomeDBiQ6TNS7.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR013684. MIRO-like.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF08477. Roc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6TNS7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASLDRVKVL VLGDSGVGKS SLVHLLCQNQ VLGNPSWTVG CSVDVRVHDY
60 70 80 90 100
REGTPEEKAF YIELWDVGGS VGSASSVKST RAVFYNSVNG IILVHDLTNK
110 120 130 140 150
KSSQNLYRWS LEALSKDSSP TGIIVSNGDY DREQFAENAV PLLLIGTKFD
160 170 180 190 200
QIPENKRNDV LTRTAFLSED FNAEEINLDC TNPRYLAAGS SNAVKLSRFF
210 220 230
DKVIEKRYFT RDPSQMQSFT DRRRFNFKSL HSD
Length:233
Mass (Da):26,113
Last modified:July 5, 2004 - v1
Checksum:iF1490193C884C086
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY391440 mRNA. Translation: AAQ91252.1.
BC078191 mRNA. Translation: AAH78191.1.
RefSeqiNP_991296.1. NM_205733.1.
UniGeneiDr.2405.

Genome annotation databases

EnsembliENSDART00000136136; ENSDARP00000115081; ENSDARG00000040959.
ENSDART00000172033; ENSDARP00000133137; ENSDARG00000040959.
GeneIDi403048.
KEGGidre:403048.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY391440 mRNA. Translation: AAQ91252.1.
BC078191 mRNA. Translation: AAH78191.1.
RefSeqiNP_991296.1. NM_205733.1.
UniGeneiDr.2405.

3D structure databases

ProteinModelPortaliQ6TNS7.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ6TNS7.
PRIDEiQ6TNS7.

Protocols and materials databases

DNASUi403048.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000136136; ENSDARP00000115081; ENSDARG00000040959.
ENSDART00000172033; ENSDARP00000133137; ENSDARG00000040959.
GeneIDi403048.
KEGGidre:403048.

Organism-specific databases

CTDi285282.
ZFINiZDB-GENE-040808-11. rabl3.

Phylogenomic databases

eggNOGiENOG410IJY5. Eukaryota.
ENOG410YR8H. LUCA.
GeneTreeiENSGT00390000007467.
HOGENOMiHOG000006785.
HOVERGENiHBG108392.
InParanoidiQ6TNS7.
KOiK07933.
OMAiHKNTRSV.
OrthoDBiEOG091G0GUK.
PhylomeDBiQ6TNS7.

Miscellaneous databases

PROiQ6TNS7.

Gene expression databases

BgeeiENSDARG00000040959.
ExpressionAtlasiQ6TNS7. differential.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR013684. MIRO-like.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF08477. Roc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRABL3_DANRE
AccessioniPrimary (citable) accession number: Q6TNS7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: July 5, 2004
Last modified: September 7, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.