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Q6TNF3 (Q6TNF3_BOVIN) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:TGM1 EMBL AAR26246.2
OrganismBos taurus (Bovine) EMBL AAR26246.2
Taxonomic identifier9913 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos

Protein attributes

Sequence length846 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Cofactor

Binds 1 calcium ion per subunit By similarity. PIRSR PIRSR000459-2

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site4071 By similarity PIRSR PIRSR000459-1
Active site4661 By similarity PIRSR PIRSR000459-1
Active site4891 By similarity PIRSR PIRSR000459-1
Metal binding5291Calcium By similarity
Metal binding5311Calcium By similarity
Metal binding5781Calcium By similarity
Metal binding5831Calcium By similarity

Sequences

Sequence LengthMass (Da)Tools
Q6TNF3 [UniParc].

Last modified July 5, 2005. Version 4.
Checksum: 31B4A675365C4849

FASTA84693,105
        10         20         30         40         50         60 
MPSPTPSSGG PRSDVGRWGG NPWQPPTTPS PEPEPEPDRR SRRGGRSFWA RCCGCCSCRN 

        70         80         90        100        110        120 
TEDDDWGPER HGDRGGRGSG SRNRRPDSRG SDSRQPGSRD SRRPGSRDSR RPGSRDSRRP 

       130        140        150        160        170        180 
GSRGSAVNAA GDGTIREGML VVTGVDLLSS RSDQNRREHH TDEFEYDELI LRRGQPFQMV 

       190        200        210        220        230        240 
LFLSRPYESS DHVTLELCIG NNPEVGKGTH VIIPVGKGGS GGWKAQVTKS SGQNLNLRVH 

       250        260        270        280        290        300 
TSPNAIIGKF QFTIRTRCEA GEFQLPFDPR NEIYILFNPW CPEDIVYVDH EDWRQEYVLN 

       310        320        330        340        350        360 
ESGRIYYGTE AQIGERTWNY GQFDHGVLDA CLYILDRRGM PYGGRGDPVS VSRVISAMVN 

       370        380        390        400        410        420 
SLDDNGVLIG NWSGDYSRGT NPSAWVGSVE ILLSYLRTGN SVPFGQCWVF AGVTTTVLRC 

       430        440        450        460        470        480 
LGLATRTVTN FNSAHDTDTS LTMDIYFDEN MKPLEHLNHD SVWNFHVWND CWMKRPDLPS 

       490        500        510        520        530        540 
GFDGWQVVDA TPQETSSGIF CCGPCSVQSI KNGLVYMKYD TPFIFAEVNS DKVYWQRQDD 

       550        560        570        580        590        600 
GSFKIVYVEE KAIGSLIITK AIGSNMREDI THTYKHPEGS EAERKAVETA AAHGSKPNVY 

       610        620        630        640        650        660 
ATRDSAEDVA VQVEAQDAVM GQDLMVSVVL TNRGSSLRTV KLHLYLSVTF YTGVTGSVFK 

       670        680        690        700        710        720 
ESKKEVVLAP GASERVTMPV AYKEYRVHLV DQGAMLLNIS GHVKENGQVL AKQHTFRLRT 

       730        740        750        760        770        780 
PDLSLTLLGA AVVGQECEVQ IVFKNPLPVT LTNVVFRLEG SGLQRPKILN VGDIGGNETV 

       790        800        810        820        830        840 
TLRQTFVPVR PGPRQLIASL DSPQLSQVHG VIQVDVAPAS GGGAFSDIRG SGRSGETIPM 


ASRGGA 

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References

[1]"Ichthyosis disorder in Chianina cattle: identification of the inherited transmission by pedigree analysis and sequencing of TGM1 candidate gene."
Longeri M., Dardano S., Molteni L., Polli M., Parma P., Sironi G., Zanotti M., Succi G.
(In) PROCEEDINGS OF THE 29TH CONFERENCE OF THE INTERNATIONAL SOCIETY OF ANIMAL GENETICS ISAG, pp.0-0, Blackwell Publishing, Edinburgh, United Kingdom (2004)
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Skin biopsy EMBL AAR26246.2.
[2]Longeri M., Parma P., Molteni L., Dardano S., Filippini F., Zanotti M.
Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Skin biopsy EMBL AAR26246.2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY676606 mRNA. Translation: AAR26246.2.
RefSeqNP_001010991.1. NM_001010991.1.
UniGeneBt.736.

3D structure databases

ProteinModelPortalQ6TNF3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING9913.ENSBTAP00000005119.

Proteomic databases

PaxDbQ6TNF3.
PRIDEQ6TNF3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID407997.
KEGGbta:407997.

Organism-specific databases

CTD7051.

Phylogenomic databases

eggNOGNOG80379.
HOGENOMHOG000231695.
HOVERGENHBG004342.
InParanoidQ6TNF3.
KOK05619.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR013808. Transglutaminase_CS.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERPTHR11590. PTHR11590. 1 hit.
PfamPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFPIRSF000459. TGM_EBP42. 1 hit.
SMARTSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
PROSITEPS00547. TRANSGLUTAMINASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20818618.

Entry information

Entry nameQ6TNF3_BOVIN
AccessionPrimary (citable) accession number: Q6TNF3
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2005
Last modified: July 9, 2014
This is version 68 of the entry and version 4 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)