Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

POU domain protein

Gene

pou1f1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi276 – 335HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

  • cell fate specification Source: ZFIN
  • transcription, DNA-templated Source: UniProtKB-UniRule

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
POU domain proteinUniRule annotation
Gene namesi
Name:pou1f1Imported
Synonyms:pit1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 9

Organism-specific databases

ZFINiZDB-GENE-040630-7. pou1f1.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Expressioni

Gene expression databases

BgeeiENSDARG00000058924.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000076317.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini186 – 260POU-specificInterPro annotationAdd BLAST75
Domaini274 – 334Homeobox DNA-bindingInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the POU transcription factor family.UniRule annotationSAAS annotation

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3802. Eukaryota.
ENOG410XQ7X. LUCA.
GeneTreeiENSGT00760000118935.
HOGENOMiHOG000116302.
HOVERGENiHBG053120.
KOiK09363.
OMAiMSCQPFT.
OrthoDBiEOG091G0U0S.
TreeFamiTF316413.

Family and domain databases

InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR010982. Lambda_DNA-bd_dom.
IPR015586. Pit_1.
IPR013847. POU.
IPR000327. POU_dom.
PANTHERiPTHR11636:SF101. PTHR11636:SF101. 1 hit.
PfamiView protein in Pfam
PF00046. Homeobox. 1 hit.
PF00157. Pou. 1 hit.
PRINTSiPR00028. POUDOMAIN.
SMARTiView protein in SMART
SM00389. HOX. 1 hit.
SM00352. POU. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
PROSITEiView protein in PROSITE
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00035. POU_1. 1 hit.
PS00465. POU_2. 1 hit.
PS51179. POU_3. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6TGI4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSCQAFSTSD SFSGLGGDTG AALPLLMHHS AAADCHNTNI CSTVPSGLPL
60 70 80 90 100
VQSSKRSHMH LSTSALGNAS ASLHYPMPPC HYSNQQTTYG MMAAQEMLSA
110 120 130 140 150
SISQTRILQT CSVPHANMVN GANSLQGALA PRLYKFPEHS LAGGSCALSH
160 170 180 190 200
GFAPLPQTLL TDEPILGDIK QELRRKSRTL DETPDMDSPQ IRELEKFAND
210 220 230 240 250
FKLRRIKLGY TQTNVGEALA AVHGSEFSQT TICRFENLQL SFKNACKLKS
260 270 280 290 300
ILAKWLEEAE QAGALFNEKM GLHERKRKRR TTISLGAKEA LERSFVEKSK
310 320 330 340 350
PSSQEIVRMA EGLHLEKEVV RVWFCNRRQR EKRVKTSLHH SSFMTKDCRA
Length:350
Mass (Da):38,731
Last modified:July 5, 2004 - v1
Checksum:iBCB2A949D450EF84
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR361551 Genomic DNA. No translation available.
BC162244 mRNA. Translation: AAI62244.1.
AY421970 mRNA. Translation: AAQ90147.1.
RefSeqiNP_998016.1. NM_212851.1.
UniGeneiDr.89712.

Genome annotation databases

EnsembliENSDART00000081878; ENSDARP00000076317; ENSDARG00000058924.
GeneIDi405777.
KEGGidre:405777.

Similar proteinsi

Entry informationi

Entry nameiQ6TGI4_DANRE
AccessioniPrimary (citable) accession number: Q6TGI4
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: August 30, 2017
This is version 122 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported