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Protein
Submitted name:

QdtB

Gene

qdtB

Organism
Thermoanaerobacterium thermosaccharolyticum (Clostridium thermosaccharolyticum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-18139.

Names & Taxonomyi

Protein namesi
Submitted name:
QdtBImported
Gene namesi
Name:qdtBImported
OrganismiThermoanaerobacterium thermosaccharolyticum (Clostridium thermosaccharolyticum)Imported
Taxonomic identifieri1517 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisThermoanaerobacterium

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei186 – 1861N6-(pyridoxal phosphate)lysineUniRule annotation

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3FRKX-ray2.15A/B1-365[»]
ProteinModelPortaliQ6TFC4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6TFC4.

Family & Domainsi

Sequence similaritiesi

Belongs to the DegT/DnrJ/EryC1 family.UniRule annotation

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR000653. DegT/StrS_aminotransferase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF01041. DegT_DnrJ_EryC1. 1 hit.
[Graphical view]
PIRSFiPIRSF000390. PLP_StrS. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6TFC4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKISFASFKP MHDEIEYEIK FKFEEIYKRN WFILGDEDKK FEQEFADYCN
60 70 80 90 100
VNYCIGCGNG LDALHLILKG YDIGFGDEVI VPSNTFIATA LAVSYTGAKP
110 120 130 140 150
IFVEPDIRTY NIDPSLIESA ITEKTKAIIA VHLYGQPADM DEIKRIAKKY
160 170 180 190 200
NLKLIEDAAQ AHGSLYKGMK VGSLGDAAGF SFYPAKNLGS LGDGGAVVTN
210 220 230 240 250
DKDLAEKIKA LSNYGSEKKY HHIYKGFNSR LDELQAGFLR VKLKYLDKWN
260 270 280 290 300
EERRKIAQKY IAGINNPNVI IPVEADYAKH VWYTFVIRSE KRDELQKYLN
310 320 330 340 350
NNGIGTLIHY PIPIHLQQAY KDLGFKTGNF PIAEKIANEI LSIPIWYGMK
360
NEEIEYVIDK INAWK
Length:365
Mass (Da):41,555
Last modified:July 5, 2004 - v1
Checksum:i9BFD26D6CD55639E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY422724 Genomic DNA. Translation: AAR85519.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY422724 Genomic DNA. Translation: AAR85519.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3FRKX-ray2.15A/B1-365[»]
ProteinModelPortaliQ6TFC4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-18139.

Miscellaneous databases

EvolutionaryTraceiQ6TFC4.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR000653. DegT/StrS_aminotransferase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF01041. DegT_DnrJ_EryC1. 1 hit.
[Graphical view]
PIRSFiPIRSF000390. PLP_StrS. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Characterization of the glycan structure of a major glycopeptide from the surface layer glycoprotein of Clostridium thermosaccharolyticum E207-71."
    Altman E., Schaffer C., Brisson J.R., Messner P.
    Eur. J. Biochem. 229:308-315(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E207-71Imported.
  2. "Surface-layer glycoproteins: an example for the diversity of bacterial glycosylation with promising impacts on nanobiotechnology."
    Schaffer C., Messner P.
    Glycobiology 14:31R-42R(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E207-71Imported.
  3. "Genetic organization of chromosomal S-layer glycan biosynthesis loci of Bacillaceae."
    Novotny R., Pfoestl A., Messner P., Schaffer C.
    Glycoconj. J. 20:435-447(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E207-71Imported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E207-71Imported.
  5. "Structural analysis of QdtB, an aminotransferase required for the biosynthesis of dTDP-3-acetamido-3,6-dideoxy-alpha-D-glucose."
    Thoden J.B., Schaffer C., Messner P., Holden H.M.
    Biochemistry 48:1553-1561(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS).

Entry informationi

Entry nameiQ6TFC4_THETR
AccessioniPrimary (citable) accession number: Q6TFC4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 17, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.