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Q6QI09 (Q6QI09_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
ATP synthase gamma chain RuleBase RU004001
Gene names
Name:Taf3 RGD 2324594
Synonyms:Atp5c1 Ensembl ENSRNOP00000049879 RGD 620011, LOC100360100 RGD 2324594
OrganismRattus norvegicus (Rat) [Reference proteome]
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length607 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF0 complex By similarity. RuleBase RU004001

Subunit structure

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a, b, b' and c By similarity. RuleBase RU004001

Sequence similarities

Belongs to the ATPase gamma chain family. RuleBase RU004001

Sequences

Sequence LengthMass (Da)Tools
Q6QI09 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 85AC4C8CB9355E2D

FASTA60767,721
        10         20         30         40         50         60 
MATLKDITRR LKSIKNIQKI TKSMKMVAAA KYARAERELK PARVYGTGSL ALYEKAEIKG 

        70         80         90        100        110        120 
PEDKKKHLII GVSSDRGLCG AIHSSVAKQM KNDMAALTAA GKEVMIVGIG EKIKSILYRT 

       130        140        150        160        170        180 
HSDQFLVSFK DVGRKPPTFG DASVIALELL NSGYEFDEGS IIFNQFKSVI SYKTEEKPIF 

       190        200        210        220        230        240 
SFSTVVAAEN MSIYDDIDAD VLQNYQEYNL ANIIYYSLKE STTSEQSARM TAMDNASKNA 

       250        260        270        280        290        300 
SDMIDKLTLT FNRTRQAVIT KELIEIISGA AALVSSKGVH TWVRKGISEV MLNWQYGLLG 

       310        320        330        340        350        360 
TYLDNCSNSC NPEFWRLMGL ISKMDGFYQQ RRGMCESYSR SLLRVSVAQI CQALGWDSVQ 

       370        380        390        400        410        420 
LSACHLLTDV LQRYLQQLGR GCHRYSELYG RTDPILDDVG EAFQLMGVNL HELEDYIHNI 

       430        440        450        460        470        480 
EPVTFPHQIP SFPVSKNSVL QFPQPGSKDA EERKDYIPDY LPPIVSSQEG MPGPLQRPSY 

       490        500        510        520        530        540 
FLGLEIGTVR SRDVAAADRR WAEICAADRA SFERRIVIVT QAGDRGSHSA LDLVDVFKAF 

       550        560        570        580        590        600 
TFHHRKCIEI NFKGACEVGQ KIVSTIEYYL CVEASSAGVQ SSANKPCQPL DNCQISCCKL 


NMKQGCT

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000049879.
[2]"Liver regeneration after PH."
Xu C.S., Zhang L., Chang C.F., Han H.P., Wang G.P., Chai L.Q., Yuan J.Y., Yang K.J., Zhao L.F., Ma H., Wang L., Wang S.F., Xing X.K., Shen G.M., Shi J.B., Rahman S., Wang Q.N., Zhang J.B.
Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000049879.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06092815 Genomic DNA. No translation available.
AY539950 mRNA. Translation: AAS66290.1.
IPIIPI00454288.
UniGeneRn.63959.

3D structure databases

SMRQ6QI09. Positions 2-273.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000041346; ENSRNOP00000049879; ENSRNOG00000019223.

Organism-specific databases

RGD620011. Atp5c1.
2324594. Taf3.

Phylogenomic databases

GeneTreeENSGT00390000006837.
HOGENOMHOG000143453.
OrthoDBEOG4FJ899.

Gene expression databases

GenevestigatorQ6QI09.

Family and domain databases

InterProIPR000131. ATPase_F1-cplx_gsu.
IPR023632. ATPase_F1_gsu_CS.
IPR023633. ATPase_F1_gsu_dom.
IPR006565. BTP.
[Graphical view]
PANTHERPTHR11693. PTHR11693. 1 hit.
PfamPF00231. ATP-synt. 1 hit.
PF07524. Bromo_TP. 1 hit.
[Graphical view]
PRINTSPR00126. ATPASEGAMMA.
SMARTSM00576. BTP. 1 hit.
[Graphical view]
SUPFAMSSF52943. ATPase_gamma. 1 hit.
TIGRFAMsTIGR01146. ATPsyn_F1gamma. 1 hit.
PROSITEPS00153. ATPASE_GAMMA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ6QI09_RAT
AccessionPrimary (citable) accession number: Q6QI09
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 1, 2013
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info