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Protein

Tripartite motif-containing protein 44

Gene

Trim44

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in the process of differentiation and maturation. May regulate the activity of TRIM17.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri174 – 21542B box-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Tripartite motif-containing protein 44
Alternative name(s):
Protein DIPB
Gene namesi
Name:Trim44
Synonyms:Dipb
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Organism-specific databases

RGDi1304877. Trim44.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 344344Tripartite motif-containing protein 44PRO_0000220374Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei336 – 3361PhosphoserineBy similarity
Modified residuei339 – 3391PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ6QA27.

Interactioni

Subunit structurei

Interacts (via coiled coil) with TRIM17 (via coiled coil).

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000007018.

Structurei

3D structure databases

ProteinModelPortaliQ6QA27.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili290 – 32536Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi79 – 17294Glu-richAdd
BLAST

Sequence similaritiesi

Contains 1 B box-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri174 – 21542B box-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Coiled coil, Zinc-finger

Phylogenomic databases

eggNOGiENOG410IPQC. Eukaryota.
ENOG4111H1M. LUCA.
HOGENOMiHOG000134694.
HOVERGENiHBG057191.
InParanoidiQ6QA27.
KOiK12020.
OrthoDBiEOG71K647.
PhylomeDBiQ6QA27.
TreeFamiTF333911.

Family and domain databases

Gene3Di4.10.45.10. 1 hit.
InterProiIPR000315. Znf_B-box.
[Graphical view]
PfamiPF00643. zf-B_box. 1 hit.
[Graphical view]
SMARTiSM00336. BBOX. 1 hit.
[Graphical view]
PROSITEiPS50119. ZF_BBOX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6QA27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASGVGAACE ELPPDGTCDE CEPDEAPGAE EVCRDCGFCY CRRHADAHRQ
60 70 80 90 100
KFLSHRLAAY VHGAQAWTPP ASGDDALPED VEAKGEAEGE VESEVGEEES
110 120 130 140 150
ESEVDSESEE ESETEEDSED ESDEESEEDS EEEMEDEQES EAEEDNQEGE
160 170 180 190 200
SEAEGETEAE SEFDPEIEME AERVAKRKCP DHGLDLSTYC QEDRQLICVL
210 220 230 240 250
CPVIGAHRGH QLSTLDEAFE ELRSKDSGGL KAAMIELVER LKFKSSDPKV
260 270 280 290 300
TRDQMKVFIQ QEFKKVQKVI ADEEQKALHL VDIQEAMATA HVTEILADIQ
310 320 330 340
SHMDRLMTQM AQAKEQLDTS NESAEPKAEG DEEGPSGASE EEDT
Length:344
Mass (Da):38,086
Last modified:July 5, 2004 - v1
Checksum:iFAC0A10A08800EF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY551091 mRNA. Translation: AAS58454.1.
RefSeqiNP_001013221.1. NM_001013203.1.
UniGeneiRn.229767.

Genome annotation databases

GeneIDi362172.
KEGGirno:362172.
UCSCiRGD:1304877. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY551091 mRNA. Translation: AAS58454.1.
RefSeqiNP_001013221.1. NM_001013203.1.
UniGeneiRn.229767.

3D structure databases

ProteinModelPortaliQ6QA27.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000007018.

Proteomic databases

PaxDbiQ6QA27.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi362172.
KEGGirno:362172.
UCSCiRGD:1304877. rat.

Organism-specific databases

CTDi54765.
RGDi1304877. Trim44.

Phylogenomic databases

eggNOGiENOG410IPQC. Eukaryota.
ENOG4111H1M. LUCA.
HOGENOMiHOG000134694.
HOVERGENiHBG057191.
InParanoidiQ6QA27.
KOiK12020.
OrthoDBiEOG71K647.
PhylomeDBiQ6QA27.
TreeFamiTF333911.

Miscellaneous databases

NextBioi678894.
PROiQ6QA27.

Family and domain databases

Gene3Di4.10.45.10. 1 hit.
InterProiIPR000315. Znf_B-box.
[Graphical view]
PfamiPF00643. zf-B_box. 1 hit.
[Graphical view]
SMARTiSM00336. BBOX. 1 hit.
[Graphical view]
PROSITEiPS50119. ZF_BBOX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Cloning and sequencing of cDNA encoding DIPB from rat."
    Ju S.K.
    Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Sprague-Dawley.
    Tissue: Midbrain.

Entry informationi

Entry nameiTRI44_RAT
AccessioniPrimary (citable) accession number: Q6QA27
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 7, 2004
Last sequence update: July 5, 2004
Last modified: November 11, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.