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Q6Q5P6

- YH41A_YEAST

UniProt

Q6Q5P6 - YH41A_YEAST

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Protein

Transposon Ty4-H Gag polyprotein

Gene

TY4A-H

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome.By similarity

GO - Molecular functioni

  1. RNA binding Source: SGD
  2. zinc ion binding Source: InterPro

GO - Biological processi

  1. transposition, RNA-mediated Source: SGD
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Transposon Ty4-H Gag polyprotein
Short name:
TY4A
Short name:
Transposon Ty4 protein A
Gene namesi
Name:TY4A-H
Synonyms:YHLWTy4-1 GAG
Ordered Locus Names:YHL009W-A
ORF Names:YHL008W-B
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VIII

Organism-specific databases

CYGDiYHL009w-a.
SGDiS000007371. YHL009W-A.

Subcellular locationi

GO - Cellular componenti

  1. retrotransposon nucleocapsid Source: SGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 413413Transposon Ty4-H Gag polyproteinPRO_0000279381Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriQ6Q5P6.

Interactioni

Protein-protein interaction databases

BioGridi36416. 15 interactions.
MINTiMINT-504056.

Structurei

3D structure databases

ProteinModelPortaliQ6Q5P6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili39 – 11577Sequence AnalysisAdd
BLAST

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiNOG283194.
GeneTreeiENSGT00720000109470.
HOGENOMiHOG000155564.
InParanoidiQ6Q5P6.
OrthoDBiEOG7G1VGM.

Family and domain databases

InterProiIPR001878. Znf_CCHC.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by ribosomal frameshifting. Align

Note: The Gag-Pol polyprotein is generated by a +1 ribosomal frameshift.

Isoform Transposon Ty4-H Gag polyprotein (identifier: Q6Q5P6) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ
60 70 80 90 100
YQRNLNRFKT ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV
110 120 130 140 150
DLVEKIQLLE TNENNNILHE HIDATGTYYL FDTLTSTNKR FYPKDCVFDY
160 170 180 190 200
RTNNVENIPI LLNNFKKFIK KYQFDDVFEN DIIEIDPREN EILCKIIKEG
210 220 230 240 250
LGESLDIMNT NTTDIFRIID GLKNKYRSLH GRDVRIRAWE KVLVDTTCRN
260 270 280 290 300
SALLMNKLQK LVLMEKWIFS KCCQDCPNLK DYLQEAIMGT LHESLRNSVK
310 320 330 340 350
QRLYNIPHNV GINHEEFLIN TVIETVIDLS PIADDQIENS CMYCKSVFHC
360 370 380 390 400
SINCKKKPNR ELRPDSTNFS KTYYLQGAQR QQQLKSSAKR TKVLEQDTKK
410
VKQSVQQQKT GNY

Note: Produced by conventional translation.

Length:413
Mass (Da):48,214
Last modified:July 5, 2004 - v1
Checksum:iFB55118BEC987195
GO
Isoform Transposon Ty4-H Gag-Pol polyprotein (identifier: P0C2J7-1) [UniParc]FASTAAdd to Basket

The sequence of this isoform can be found in the external entry P0C2J7.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.

Note: Produced by +1 ribosomal frameshifting between codon Leu-362 and Gly-363 of the YHL009W-A ORF.

Length:1,802
Mass (Da):207,970
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U11581 Genomic DNA. No translation available.
AY557839 Genomic DNA. Translation: AAS56165.1.
BK006934 Genomic DNA. Translation: DAA06679.1.
PIRiS52610.
RefSeqiNP_058134.1. NM_001184403.1. [Q6Q5P6-1]

Genome annotation databases

EnsemblFungiiYHL009W-A; YHL009W-A; YHL009W-A. [Q6Q5P6-1]
GeneIDi856379.
KEGGisce:YHL009W-A.

Keywords - Coding sequence diversityi

Ribosomal frameshifting

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U11581 Genomic DNA. No translation available.
AY557839 Genomic DNA. Translation: AAS56165.1 .
BK006934 Genomic DNA. Translation: DAA06679.1 .
PIRi S52610.
RefSeqi NP_058134.1. NM_001184403.1. [Q6Q5P6-1 ]

3D structure databases

ProteinModelPortali Q6Q5P6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 36416. 15 interactions.
MINTi MINT-504056.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YHL009W-A ; YHL009W-A ; YHL009W-A . [Q6Q5P6-1 ]
GeneIDi 856379.
KEGGi sce:YHL009W-A.

Organism-specific databases

CYGDi YHL009w-a.
SGDi S000007371. YHL009W-A.

Phylogenomic databases

eggNOGi NOG283194.
GeneTreei ENSGT00720000109470.
HOGENOMi HOG000155564.
InParanoidi Q6Q5P6.
OrthoDBi EOG7G1VGM.

Miscellaneous databases

NextBioi 981872.

Gene expression databases

Genevestigatori Q6Q5P6.

Family and domain databases

InterProi IPR001878. Znf_CCHC.
[Graphical view ]
SMARTi SM00343. ZnF_C2HC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. "Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence."
    Kim J.M., Vanguri S., Boeke J.D., Gabriel A., Voytas D.F.
    Genome Res. 8:464-478(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NOMENCLATURE.
  5. "Happy together: the life and times of Ty retrotransposons and their hosts."
    Lesage P., Todeschini A.L.
    Cytogenet. Genome Res. 110:70-90(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: REVIEW.

Entry informationi

Entry nameiYH41A_YEAST
AccessioniPrimary (citable) accession number: Q6Q5P6
Secondary accession number(s): D3DKQ6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 6, 2007
Last sequence update: July 5, 2004
Last modified: October 29, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Retrotransposons are mobile genetic entities that are able to replicate via an RNA intermediate and a reverse transcription step. In contrast to retroviruses, retrotransposons are non-infectious, lack an envelope and remain intracellular. Ty4 retrotransposons belong to the copia elements (pseudoviridae).

Keywords - Technical termi

Complete proteome, Reference proteome, Transposable element

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

External Data

Dasty 3