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Protein

Transposon Ty4-H Gag polyprotein

Gene

TY4A-H

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome.By similarity

Miscellaneous

Retrotransposons are mobile genetic entities that are able to replicate via an RNA intermediate and a reverse transcription step. In contrast to retroviruses, retrotransposons are non-infectious, lack an envelope and remain intracellular. Ty4 retrotransposons belong to the copia elements (pseudoviridae).

GO - Molecular functioni

  • RNA binding Source: SGD

GO - Biological processi

  • transposition, RNA-mediated Source: SGD

Names & Taxonomyi

Protein namesi
Recommended name:
Transposon Ty4-H Gag polyprotein
Short name:
TY4A
Short name:
Transposon Ty4 protein A
Gene namesi
Name:TY4A-H
Synonyms:YHLWTy4-1 GAG
Ordered Locus Names:YHL009W-A
ORF Names:YHL008W-B
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome VIII

Organism-specific databases

EuPathDBiFungiDB:YHL009W-A
SGDiS000007371 YHL009W-A

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002793811 – 413Transposon Ty4-H Gag polyproteinAdd BLAST413

Proteomic databases

PaxDbiQ6Q5P6
PRIDEiQ6Q5P6
TopDownProteomicsiQ6Q5P6-1 [Q6Q5P6-1]

Interactioni

Protein-protein interaction databases

BioGridi36416, 15 interactors
STRINGi4932.YHL009W-A

Structurei

3D structure databases

ProteinModelPortaliQ6Q5P6
SMRiQ6Q5P6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili39 – 115Sequence analysisAdd BLAST77

Keywords - Domaini

Coiled coil

Phylogenomic databases

GeneTreeiENSGT00890000140151
HOGENOMiHOG000155564
InParanoidiQ6Q5P6
OrthoDBiEOG092C2FF9

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by ribosomal frameshifting. AlignAdd to basket

Note: The Gag-Pol polyprotein is generated by a +1 ribosomal frameshift.
Isoform Transposon Ty4-H Gag polyprotein (identifier: Q6Q5P6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ
60 70 80 90 100
YQRNLNRFKT ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV
110 120 130 140 150
DLVEKIQLLE TNENNNILHE HIDATGTYYL FDTLTSTNKR FYPKDCVFDY
160 170 180 190 200
RTNNVENIPI LLNNFKKFIK KYQFDDVFEN DIIEIDPREN EILCKIIKEG
210 220 230 240 250
LGESLDIMNT NTTDIFRIID GLKNKYRSLH GRDVRIRAWE KVLVDTTCRN
260 270 280 290 300
SALLMNKLQK LVLMEKWIFS KCCQDCPNLK DYLQEAIMGT LHESLRNSVK
310 320 330 340 350
QRLYNIPHNV GINHEEFLIN TVIETVIDLS PIADDQIENS CMYCKSVFHC
360 370 380 390 400
SINCKKKPNR ELRPDSTNFS KTYYLQGAQR QQQLKSSAKR TKVLEQDTKK
410
VKQSVQQQKT GNY
Note: Produced by conventional translation.
Length:413
Mass (Da):48,214
Last modified:July 5, 2004 - v1
Checksum:iFB55118BEC987195
GO
Isoform Transposon Ty4-H Gag-Pol polyprotein (identifier: P0C2J7-1) [UniParc]FASTAAdd to basket
The sequence of this isoform can be found in the external entry P0C2J7.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.
Note: Produced by +1 ribosomal frameshifting between codon Leu-362 and Gly-363 of the YHL009W-A ORF.
Length:1,802
Mass (Da):207,970
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U11581 Genomic DNA No translation available.
AY557839 Genomic DNA Translation: AAS56165.1
BK006934 Genomic DNA Translation: DAA06679.1
PIRiS52610
RefSeqiNP_058134.1, NM_001184403.1 [Q6Q5P6-1]

Genome annotation databases

EnsemblFungiiYHL009W-A; YHL009W-A; YHL009W-A [Q6Q5P6-1]
GeneIDi856379
KEGGisce:YHL009W-A

Keywords - Coding sequence diversityi

Ribosomal frameshifting

Similar proteinsi

Entry informationi

Entry nameiYH41A_YEAST
AccessioniPrimary (citable) accession number: Q6Q5P6
Secondary accession number(s): D3DKQ6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 6, 2007
Last sequence update: July 5, 2004
Last modified: May 23, 2018
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome, Transposable element

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