ID TRAF7_HUMAN Reviewed; 670 AA. AC Q6Q0C0; Q9H073; DT 11-OCT-2004, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 27-MAR-2024, entry version 190. DE RecName: Full=E3 ubiquitin-protein ligase TRAF7; DE EC=2.3.2.- {ECO:0000250|UniProtKB:Q922B6}; DE EC=2.3.2.27 {ECO:0000269|PubMed:37086853}; DE AltName: Full=RING finger and WD repeat-containing protein 1; DE AltName: Full=RING finger protein 119; DE AltName: Full=RING-type E3 ubiquitin transferase TRAF7 {ECO:0000305}; DE AltName: Full=TNF receptor-associated factor 7; GN Name=TRAF7; Synonyms=RFWD1, RNF119; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] {ECO:0000305, ECO:0000312|EMBL:AAS68363.1} RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY, RP ALTERNATIVE SPLICING, AND INTERACTION WITH MAP3K3. RX PubMed=15001576; DOI=10.1074/jbc.c400063200; RA Xu L.-G., Li L.-Y., Shu H.-B.; RT "TRAF7 potentiates MEKK3-induced AP1 and CHOP activation and induces RT apoptosis."; RL J. Biol. Chem. 279:17278-17282(2004). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC TISSUE=Uterus; RX PubMed=11230166; DOI=10.1101/gr.gr1547r; RA Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., RA Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., RA Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., RA Ottenwaelder B., Obermaier B., Tampe J., Heubner D., Wambutt R., Korn B., RA Klein M., Poustka A.; RT "Towards a catalog of human genes and proteins: sequencing and analysis of RT 500 novel complete protein coding human cDNAs."; RL Genome Res. 11:422-435(2001). RN [3] {ECO:0000305} RP FUNCTION, PHOSPHORYLATION, SUBCELLULAR LOCATION, HOMODIMERIZATION, AND RP INTERACTION WITH MAP3K3. RX PubMed=14743216; DOI=10.1038/ncb1086; RA Bouwmeester T., Bauch A., Ruffner H., Angrand P.-O., Bergamini G., RA Croughton K., Cruciat C., Eberhard D., Gagneur J., Ghidelli S., Hopf C., RA Huhse B., Mangano R., Michon A.-M., Schirle M., Schlegl J., Schwab M., RA Stein M.A., Bauer A., Casari G., Drewes G., Gavin A.-C., Jackson D.B., RA Joberty G., Neubauer G., Rick J., Kuster B., Superti-Furga G.; RT "A physical and functional map of the human TNF-alpha/NF-kappa B signal RT transduction pathway."; RL Nat. Cell Biol. 6:97-105(2004). RN [4] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-88 AND SER-91, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18669648; DOI=10.1073/pnas.0805139105; RA Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., RA Elledge S.J., Gygi S.P.; RT "A quantitative atlas of mitotic phosphorylation."; RL Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). RN [5] RP FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=21518757; DOI=10.1074/jbc.m110.215426; RA Zotti T., Uva A., Ferravante A., Vessichelli M., Scudiero I., RA Ceccarelli M., Vito P., Stilo R.; RT "TRAF7 protein promotes Lys-29-linked polyubiquitination of IkappaB kinase RT (IKKgamma)/NF-kappaB essential modulator (NEMO) and p65/RelA protein and RT represses NF-kappaB activation."; RL J. Biol. Chem. 286:22924-22933(2011). RN [6] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-61, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [7] RP FUNCTION, INVOLVEMENT IN CAFDADD, VARIANTS CAFDADD GLU-346; GLY-371; RP ALA-601 AND GLN-655, AND CHARACTERIZATION OF VARIANTS CAFDADD GLU-346; RP GLY-371; ALA-601 AND GLN-655. RX PubMed=29961569; DOI=10.1016/j.ajhg.2018.06.005; RG Undiagnosed Diseases Network; RA Tokita M.J., Chen C.A., Chitayat D., Macnamara E., Rosenfeld J.A., RA Hanchard N., Lewis A.M., Brown C.W., Marom R., Shao Y., Novacic D., RA Wolfe L., Wahl C., Tifft C.J., Toro C., Bernstein J.A., Hale C.L., RA Silver J., Hudgins L., Ananth A., Hanson-Kahn A., Shuster S., RA Magoulas P.L., Patel V.N., Zhu W., Chen S.M., Jiang Y., Liu P., Eng C.M., RA Batkovskyte D., di Ronza A., Sardiello M., Lee B.H., Schaaf C.P., Yang Y., RA Wang X.; RT "De novo missense variants in TRAF7 cause developmental delay, congenital RT anomalies, and dysmorphic features."; RL Am. J. Hum. Genet. 103:154-162(2018). RN [8] RP FUNCTION, SUBCELLULAR LOCATION, CATALYTIC ACTIVITY, AND MUTAGENESIS OF RP CYS-131. RX PubMed=37086853; DOI=10.1016/j.virs.2023.04.005; RA Huang J.P., Yang Y.X., Chen T., Wang D.D., Li J., Xu L.G.; RT "TRAF7 negatively regulates the RLR signaling pathway by facilitating the RT K48-linked ubiquitination of TBK1."; RL Virol. Sin. 38:419-428(2023). CC -!- FUNCTION: E3 ubiquitin and SUMO-protein ligase that plays a role in CC different biological processes such as innate immunity, inflammation or CC apoptosis (PubMed:15001576, PubMed:37086853). Potentiates MAP3K3- CC mediated activation of JUN/AP1 and DDIT3 transcriptional regulators CC (PubMed:14743216). Negatively regulates MYB transcriptional activity by CC sequestering it to the cytosol via SUMOylation (By similarity). Plays a CC role in the phosphorylation of MAPK1 and/or MAPK3, probably via its CC interaction with MAP3K3. Negatively regulates RLR-mediated innate CC immunity by promoting 'Lys-48'-linked ubiquitination of TBK1 through CC its RING domain to inhibit the cellular antiviral response CC (PubMed:37086853). Promotes 'Lys-29'-linked polyubiquitination of CC NEMO/IKBKG and RELA leading to targeting these two proteins to CC lysosomal degradative pathways, reducing the transcriptional activity CC of NF-kappa-B (PubMed:21518757). {ECO:0000250|UniProtKB:Q922B6, CC ECO:0000269|PubMed:14743216, ECO:0000269|PubMed:15001576, CC ECO:0000269|PubMed:21518757, ECO:0000269|PubMed:29961569, CC ECO:0000269|PubMed:37086853}. CC -!- CATALYTIC ACTIVITY: CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L- CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.; CC EC=2.3.2.27; Evidence={ECO:0000269|PubMed:37086853}; CC -!- PATHWAY: Protein modification; protein ubiquitination. CC -!- SUBUNIT: Homodimer. Interacts with MAP3K3 and promotes the kinase CC activity of this enzyme. {ECO:0000269|PubMed:14743216, CC ECO:0000269|PubMed:15001576}. CC -!- INTERACTION: CC Q6Q0C0; Q99759: MAP3K3; NbExp=3; IntAct=EBI-307556, EBI-307281; CC Q6Q0C0; Q9ERK0: Ripk4; Xeno; NbExp=2; IntAct=EBI-307556, EBI-6116422; CC -!- SUBCELLULAR LOCATION: Cytoplasmic vesicle CC {ECO:0000269|PubMed:14743216}. Cytoplasm {ECO:0000269|PubMed:21518757, CC ECO:0000269|PubMed:37086853}. Nucleus {ECO:0000269|PubMed:37086853}. CC Note=Colocalizes with MAP3K3 to vesicle-like structures throughout the CC cytoplasm. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1 {ECO:0000269|PubMed:15001576}; CC IsoId=Q6Q0C0-1; Sequence=Displayed; CC Name=2 {ECO:0000269|PubMed:15001576}; CC IsoId=Q6Q0C0-2; Sequence=VSP_051607; CC -!- TISSUE SPECIFICITY: Ubiquitously expressed with high levels in skeletal CC muscle, heart, colon, spleen, kidney, liver and placenta. CC {ECO:0000269|PubMed:15001576}. CC -!- PTM: Phosphorylated by MAP3K3. {ECO:0000269|PubMed:14743216}. CC -!- PTM: Ubiquitinates itself upon phosphorylation. CC -!- DISEASE: Cardiac, facial, and digital anomalies with developmental CC delay (CAFDADD) [MIM:618164]: An autosomal dominant disorder CC characterized by delayed motor and speech development, developmental CC regression, congenital heart defects, limb and digital anomalies, and CC dysmorphic features. Cardiac features include pulmonary stenosis, CC patent ductus arteriosus, aortic coarctation, valvular defects, CC hypoplastic left heart, double outlet right ventricle, and conduction CC abnormalities. Dysmorphic facial features include multiple hair whorls CC or hairline abnormalities, ptosis, epicanthal folds, and low-set or CC dysplastic ears. {ECO:0000269|PubMed:29961569}. Note=The disease is CC caused by variants affecting the gene represented in this entry. CC -!- SIMILARITY: Belongs to the WD repeat TRAF7 family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AY569455; AAS68363.1; -; mRNA. DR EMBL; AL136921; CAB66855.1; -; mRNA. DR CCDS; CCDS10461.1; -. [Q6Q0C0-1] DR RefSeq; NP_115647.2; NM_032271.2. [Q6Q0C0-1] DR AlphaFoldDB; Q6Q0C0; -. DR SMR; Q6Q0C0; -. DR BioGRID; 123964; 128. DR CORUM; Q6Q0C0; -. DR IntAct; Q6Q0C0; 48. DR MINT; Q6Q0C0; -. DR STRING; 9606.ENSP00000318944; -. DR iPTMnet; Q6Q0C0; -. DR PhosphoSitePlus; Q6Q0C0; -. DR BioMuta; TRAF7; -. DR DMDM; 54036486; -. DR EPD; Q6Q0C0; -. DR jPOST; Q6Q0C0; -. DR MassIVE; Q6Q0C0; -. DR MaxQB; Q6Q0C0; -. DR PaxDb; 9606-ENSP00000318944; -. DR PeptideAtlas; Q6Q0C0; -. DR ProteomicsDB; 67263; -. [Q6Q0C0-1] DR ProteomicsDB; 67264; -. [Q6Q0C0-2] DR Pumba; Q6Q0C0; -. DR Antibodypedia; 23591; 203 antibodies from 29 providers. DR DNASU; 84231; -. DR Ensembl; ENST00000326181.11; ENSP00000318944.6; ENSG00000131653.14. [Q6Q0C0-1] DR Ensembl; ENST00000704452.1; ENSP00000515903.1; ENSG00000131653.14. [Q6Q0C0-1] DR GeneID; 84231; -. DR KEGG; hsa:84231; -. DR MANE-Select; ENST00000326181.11; ENSP00000318944.6; NM_032271.3; NP_115647.2. DR UCSC; uc002cow.4; human. [Q6Q0C0-1] DR AGR; HGNC:20456; -. DR CTD; 84231; -. DR DisGeNET; 84231; -. DR GeneCards; TRAF7; -. DR HGNC; HGNC:20456; TRAF7. DR HPA; ENSG00000131653; Low tissue specificity. DR MalaCards; TRAF7; -. DR MIM; 606692; gene. DR MIM; 618164; phenotype. DR neXtProt; NX_Q6Q0C0; -. DR OpenTargets; ENSG00000131653; -. DR Orphanet; 2495; Meningioma. DR Orphanet; 592570; TRAF7-associated heart defect-digital anomalies-facial dysmorphism-motor and speech delay syndrome. DR PharmGKB; PA134917323; -. DR VEuPathDB; HostDB:ENSG00000131653; -. DR eggNOG; KOG0274; Eukaryota. DR eggNOG; KOG0297; Eukaryota. DR GeneTree; ENSGT00940000157022; -. DR HOGENOM; CLU_026971_0_0_1; -. DR InParanoid; Q6Q0C0; -. DR OMA; NHHILCG; -. DR OrthoDB; 1109965at2759; -. DR PhylomeDB; Q6Q0C0; -. DR TreeFam; TF328643; -. DR PathwayCommons; Q6Q0C0; -. DR Reactome; R-HSA-983168; Antigen processing: Ubiquitination & Proteasome degradation. DR SignaLink; Q6Q0C0; -. DR SIGNOR; Q6Q0C0; -. DR UniPathway; UPA00143; -. DR BioGRID-ORCS; 84231; 44 hits in 1197 CRISPR screens. DR GenomeRNAi; 84231; -. DR Pharos; Q6Q0C0; Tbio. DR PRO; PR:Q6Q0C0; -. DR Proteomes; UP000005640; Chromosome 16. DR RNAct; Q6Q0C0; Protein. DR Bgee; ENSG00000131653; Expressed in stromal cell of endometrium and 163 other cell types or tissues. DR ExpressionAtlas; Q6Q0C0; baseline and differential. DR GO; GO:0031410; C:cytoplasmic vesicle; IEA:UniProtKB-KW. DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA. DR GO; GO:0005730; C:nucleolus; IBA:GO_Central. DR GO; GO:0005886; C:plasma membrane; IDA:HPA. DR GO; GO:0000151; C:ubiquitin ligase complex; IDA:UniProtKB. DR GO; GO:0061630; F:ubiquitin protein ligase activity; IDA:UniProt. DR GO; GO:0004842; F:ubiquitin-protein transferase activity; IDA:UniProtKB. DR GO; GO:0008270; F:zinc ion binding; NAS:UniProtKB. DR GO; GO:0006915; P:apoptotic process; IDA:MGI. DR GO; GO:0007219; P:Notch signaling pathway; IBA:GO_Central. DR GO; GO:2001235; P:positive regulation of apoptotic signaling pathway; IMP:UniProtKB. DR GO; GO:0043410; P:positive regulation of MAPK cascade; IDA:UniProtKB. DR GO; GO:0043525; P:positive regulation of neuron apoptotic process; IEA:Ensembl. DR GO; GO:2000060; P:positive regulation of ubiquitin-dependent protein catabolic process; IDA:UniProt. DR GO; GO:0035519; P:protein K29-linked ubiquitination; IDA:UniProt. DR GO; GO:0016567; P:protein ubiquitination; IDA:UniProtKB. DR GO; GO:0070372; P:regulation of ERK1 and ERK2 cascade; IMP:UniProtKB. DR CDD; cd16644; mRING-HC-C3HC3D_TRAF7; 1. DR CDD; cd00200; WD40; 1. DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2. DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2. DR InterPro; IPR020472; G-protein_beta_WD-40_rep. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf. DR InterPro; IPR019775; WD40_repeat_CS. DR InterPro; IPR036322; WD40_repeat_dom_sf. DR InterPro; IPR001680; WD40_rpt. DR InterPro; IPR027370; Znf-RING_euk. DR InterPro; IPR001841; Znf_RING. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR InterPro; IPR017907; Znf_RING_CS. DR InterPro; IPR001293; Znf_TRAF. DR PANTHER; PTHR19848:SF8; E3 UBIQUITIN-PROTEIN LIGASE TRAF7; 1. DR PANTHER; PTHR19848; WD40 REPEAT PROTEIN; 1. DR Pfam; PF00400; WD40; 5. DR Pfam; PF13445; zf-RING_UBOX; 1. DR PRINTS; PR00320; GPROTEINBRPT. DR SMART; SM00184; RING; 1. DR SMART; SM00320; WD40; 7. DR SUPFAM; SSF57850; RING/U-box; 1. DR SUPFAM; SSF49599; TRAF domain-like; 2. DR SUPFAM; SSF50978; WD40 repeat-like; 1. DR PROSITE; PS00678; WD_REPEATS_1; 2. DR PROSITE; PS50082; WD_REPEATS_2; 5. DR PROSITE; PS50294; WD_REPEATS_REGION; 1. DR PROSITE; PS00518; ZF_RING_1; 1. DR PROSITE; PS50089; ZF_RING_2; 1. DR PROSITE; PS50145; ZF_TRAF; 1. DR Genevisible; Q6Q0C0; HS. PE 1: Evidence at protein level; KW Alternative splicing; Apoptosis; Cytoplasm; Cytoplasmic vesicle; KW Disease variant; Metal-binding; Nucleus; Phosphoprotein; KW Reference proteome; Repeat; Transcription; Transcription regulation; KW Transferase; Ubl conjugation; Ubl conjugation pathway; WD repeat; Zinc; KW Zinc-finger. FT CHAIN 1..670 FT /note="E3 ubiquitin-protein ligase TRAF7" FT /id="PRO_0000051296" FT REPEAT 394..433 FT /note="WD 1" FT /evidence="ECO:0000255" FT REPEAT 437..474 FT /note="WD 2" FT /evidence="ECO:0000255" FT REPEAT 477..513 FT /note="WD 3" FT /evidence="ECO:0000255" FT REPEAT 515..554 FT /note="WD 4" FT /evidence="ECO:0000255" FT REPEAT 557..594 FT /note="WD 5" FT /evidence="ECO:0000255" FT REPEAT 597..638 FT /note="WD 6" FT /evidence="ECO:0000255" FT REPEAT 641..669 FT /note="WD 7" FT /evidence="ECO:0000255" FT ZN_FING 131..165 FT /note="RING-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175" FT ZN_FING 222..276 FT /note="TRAF-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00207" FT REGION 1..37 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 49..97 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 49..70 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 81..97 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 61 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 88 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:18669648" FT MOD_RES 91 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:18669648" FT VAR_SEQ 1..76 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:11230166, FT ECO:0000303|PubMed:15001576" FT /id="VSP_051607" FT VARIANT 346 FT /note="K -> E (in CAFDADD; no significant effect on FT phosphorylation of MAPK1 and/or MAPK3; dbSNP:rs1567252467)" FT /evidence="ECO:0000269|PubMed:29961569" FT /id="VAR_081685" FT VARIANT 371 FT /note="R -> G (in CAFDADD; decreased phosphorylation of FT MAPK1 and/or MAPK3; dbSNP:rs1567252659)" FT /evidence="ECO:0000269|PubMed:29961569" FT /id="VAR_081686" FT VARIANT 601 FT /note="T -> A (in CAFDADD; decreased phosphorylation of FT MAPK1 and/or MAPK3; dbSNP:rs1567254067)" FT /evidence="ECO:0000269|PubMed:29961569" FT /id="VAR_081687" FT VARIANT 655 FT /note="R -> Q (in CAFDADD; decreased phosphorylation of FT MAPK1 and/or MAPK3; dbSNP:rs1331463984)" FT /evidence="ECO:0000269|PubMed:29961569" FT /id="VAR_081688" FT MUTAGEN 131 FT /note="C->S: Complete loss of IFN-beta promoter inhibition FT after viral infection." FT /evidence="ECO:0000269|PubMed:37086853" SQ SEQUENCE 670 AA; 74609 MW; 5624045D674849C6 CRC64; MSSGKSARYN RFSGGPSNLP TPDVTTGTRM ETTFGPAFSA VTTITKADGT STYKQHCRTP SSSSTLAYSP RDEEDSMPPI STPRRSDSAI SVRSLHSESS MSLRSTFSLP EEEEEPEPLV FAEQPSVKLC CQLCCSVFKD PVITTCGHTF CRRCALKSEK CPVDNVKLTV VVNNIAVAEQ IGELFIHCRH GCRVAGSGKP PIFEVDPRGC PFTIKLSARK DHEGSCDYRP VRCPNNPSCP PLLRMNLEAH LKECEHIKCP HSKYGCTFIG NQDTYETHLE TCRFEGLKEF LQQTDDRFHE MHVALAQKDQ EIAFLRSMLG KLSEKIDQLE KSLELKFDVL DENQSKLSED LMEFRRDASM LNDELSHINA RLNMGILGSY DPQQIFKCKG TFVGHQGPVW CLCVYSMGDL LFSGSSDKTI KVWDTCTTYK CQKTLEGHDG IVLALCIQGC KLYSGSADCT IIVWDIQNLQ KVNTIRAHDN PVCTLVSSHN VLFSGSLKAI KVWDIVGTEL KLKKELTGLN HWVRALVAAQ SYLYSGSYQT IKIWDIRTLD CIHVLQTSGG SVYSIAVTNH HIVCGTYENL IHVWDIESKE QVRTLTGHVG TVYALAVIST PDQTKVFSAS YDRSLRVWSM DNMICTQTLL RHQGSVTALA VSRGRLFSGA VDSTVKVWTC //