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Protein

NudC domain-containing protein 1

Gene

Nudcd1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
NudC domain-containing protein 1
Gene namesi
Name:Nudcd1Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 15

Organism-specific databases

MGIiMGI:1914679. Nudcd1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 582582NudC domain-containing protein 1PRO_0000307705Add
BLAST

Proteomic databases

EPDiQ6PIP5.
MaxQBiQ6PIP5.
PaxDbiQ6PIP5.
PRIDEiQ6PIP5.

PTM databases

PhosphoSiteiQ6PIP5.

Expressioni

Gene expression databases

BgeeiQ6PIP5.
CleanExiMM_NUDCD1.
GenevisibleiQ6PIP5. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000042746.

Structurei

3D structure databases

ProteinModelPortaliQ6PIP5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini272 – 36089CSPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CS domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG4379. Eukaryota.
ENOG410XRII. LUCA.
GeneTreeiENSGT00390000007776.
HOGENOMiHOG000007751.
HOVERGENiHBG104995.
InParanoidiQ6PIP5.
OMAiFIYRQPA.
OrthoDBiEOG7PGDQ6.
PhylomeDBiQ6PIP5.
TreeFamiTF323350.

Family and domain databases

Gene3Di2.60.40.790. 1 hit.
InterProiIPR007052. CS_dom.
IPR008978. HSP20-like_chaperone.
[Graphical view]
PfamiPF04969. CS. 1 hit.
[Graphical view]
SUPFAMiSSF49764. SSF49764. 1 hit.
PROSITEiPS51203. CS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6PIP5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAANCSLRV KRPLLDPRFE GYKLSLEPLP CYQLELDAAV AEVKLRDDQY
60 70 80 90 100
TLEHMHAFGM YNYLHCDAWY QDSVYYIDNL GRIMNLTVML DTALGKPREV
110 120 130 140 150
FRLPTDVTAY DNRLCASIHF TSPSWVTLSD GTGRLYVIGT GDRGNSPEKW
160 170 180 190 200
EIMFNEELGN PFIIIHSISL LKAEEHSVAI LLLRIEKEEL DLKGSGFYVS
210 220 230 240 250
LEWVVVTKKK EDSKKYEITK HHVLRGKSVP HYAAIEPNGN GLMIVSYKSF
260 270 280 290 300
KVISGDQDLE ENMDEDRPEK IKVEPLYYWQ QSEDDLTVTV RLPESSTKED
310 320 330 340 350
IQIQFLPDNI NIKLKDIQVL EGKLYSSIDH EGSTWTIKEN DSLEISLIKK
360 370 380 390 400
NEGLMWPELV VGDKQGELLR DPAQCAAIAE RLMHLTSDEL NPNPDKEKPA
410 420 430 440 450
CNAQELEECD IFFEESSSLC RFDGNTLQTT HVVNLGSNQY LFSVIVDPKE
460 470 480 490 500
MPCFCLRHDV DALLWQPHCS KQDDMWEHIA TFNALGYVQA SKRDKKFFAC
510 520 530 540 550
APNYSYAALC ECLRRVFIYR QPTPMSTVLY NRKEGRHVGQ VAKQQVASLE
560 570 580
TNDPILGFQA TNERLFVLTT KNLFLIRVNT EN
Length:582
Mass (Da):66,705
Last modified:October 23, 2007 - v2
Checksum:iB62BB34C1F9F1A64
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti22 – 221Y → C in BAE39873 (PubMed:16141072).Curated
Sequence conflicti22 – 221Y → C in BAE40093 (PubMed:16141072).Curated
Sequence conflicti26 – 283LEP → FER in BAE39873 (PubMed:16141072).Curated
Sequence conflicti26 – 283LEP → FER in BAE40093 (PubMed:16141072).Curated
Sequence conflicti49 – 491Q → K in AAQ08822 (PubMed:14688378).Curated
Sequence conflicti113 – 1131R → L in BAC36947 (PubMed:16141072).Curated
Sequence conflicti180 – 1801I → V in AAQ08822 (PubMed:14688378).Curated
Sequence conflicti257 – 2571Q → K in BAC36947 (PubMed:16141072).Curated
Sequence conflicti273 – 2731Missing in AAQ08822 (PubMed:14688378).Curated
Sequence conflicti302 – 3021Q → R in AAH31583 (PubMed:15489334).Curated
Sequence conflicti428 – 4281Q → K in AAH31583 (PubMed:15489334).Curated
Sequence conflicti441 – 4411L → M in BAE39873 (PubMed:16141072).Curated
Sequence conflicti441 – 4411L → M in BAE40093 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF521132 mRNA. Translation: AAQ08822.1.
AK077673 mRNA. Translation: BAC36947.1.
AK167855 mRNA. Translation: BAE39873.1.
AK168122 mRNA. Translation: BAE40093.1.
BC031583 mRNA. Translation: AAH31583.1.
CCDSiCCDS27455.1.
RefSeqiNP_001107026.1. NM_001113554.1.
NP_080425.3. NM_026149.4.
UniGeneiMm.490404.

Genome annotation databases

EnsembliENSMUST00000038719; ENSMUSP00000042746; ENSMUSG00000038736.
GeneIDi67429.
KEGGimmu:67429.
UCSCiuc007vpq.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF521132 mRNA. Translation: AAQ08822.1.
AK077673 mRNA. Translation: BAC36947.1.
AK167855 mRNA. Translation: BAE39873.1.
AK168122 mRNA. Translation: BAE40093.1.
BC031583 mRNA. Translation: AAH31583.1.
CCDSiCCDS27455.1.
RefSeqiNP_001107026.1. NM_001113554.1.
NP_080425.3. NM_026149.4.
UniGeneiMm.490404.

3D structure databases

ProteinModelPortaliQ6PIP5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000042746.

PTM databases

PhosphoSiteiQ6PIP5.

Proteomic databases

EPDiQ6PIP5.
MaxQBiQ6PIP5.
PaxDbiQ6PIP5.
PRIDEiQ6PIP5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000038719; ENSMUSP00000042746; ENSMUSG00000038736.
GeneIDi67429.
KEGGimmu:67429.
UCSCiuc007vpq.2. mouse.

Organism-specific databases

CTDi84955.
MGIiMGI:1914679. Nudcd1.

Phylogenomic databases

eggNOGiKOG4379. Eukaryota.
ENOG410XRII. LUCA.
GeneTreeiENSGT00390000007776.
HOGENOMiHOG000007751.
HOVERGENiHBG104995.
InParanoidiQ6PIP5.
OMAiFIYRQPA.
OrthoDBiEOG7PGDQ6.
PhylomeDBiQ6PIP5.
TreeFamiTF323350.

Miscellaneous databases

ChiTaRSiNudcd1. mouse.
NextBioi324540.
PROiQ6PIP5.
SOURCEiSearch...

Gene expression databases

BgeeiQ6PIP5.
CleanExiMM_NUDCD1.
GenevisibleiQ6PIP5. MM.

Family and domain databases

Gene3Di2.60.40.790. 1 hit.
InterProiIPR007052. CS_dom.
IPR008978. HSP20-like_chaperone.
[Graphical view]
PfamiPF04969. CS. 1 hit.
[Graphical view]
SUPFAMiSSF49764. SSF49764. 1 hit.
PROSITEiPS51203. CS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A novel mechanism of alternative promoter and splicing regulates the epitope generation of tumor antigen CML66-L."
    Yan Y., Phan L., Yang F., Talpaz M., Yang Y., Xiong Z., Ng B., Timchenko N.A., Wu C.J., Ritz J., Wang H., Yang X.-F.
    J. Immunol. 172:651-660(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: C57BL/6JImported.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6JImported and DBA/2Imported.
    Tissue: EmbryoImported.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/NImported.
    Tissue: Mammary tumorImported.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brain, Lung, Pancreas, Spleen and Testis.

Entry informationi

Entry nameiNUDC1_MOUSE
AccessioniPrimary (citable) accession number: Q6PIP5
Secondary accession number(s): Q3THV3, Q71EC1, Q8BJZ5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: October 23, 2007
Last modified: May 11, 2016
This is version 81 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.