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Protein
Submitted name:

Syne1 protein

Gene

Syne1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Syne1 proteinImported
Gene namesi
Name:Syne1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1927152 Syne1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 818CytoplasmicPROSITE-ProRule annotationAdd BLAST818
Transmembranei812 – 837HelicalSequence analysisAdd BLAST26
Topological domaini840 – 869Perinuclear spacePROSITE-ProRule annotationAdd BLAST30

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PeptideAtlasiQ6PI72
PRIDEiQ6PI72

Expressioni

Gene expression databases

GenevisibleiQ6PI72 MM

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

ProteinModelPortaliQ6PI72
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini810 – 869KASHInterPro annotationAdd BLAST60

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IUP1 Eukaryota
ENOG410YQV5 LUCA
HOVERGENiHBG056327
KOiK19326

Family and domain databases

InterProiView protein in InterPro
IPR012315 KASH
IPR018159 Spectrin/alpha-actinin
IPR002017 Spectrin_repeat
IPR030265 SYNE1
PANTHERiPTHR44867 PTHR44867, 1 hit
PfamiView protein in Pfam
PF10541 KASH, 1 hit
PF00435 Spectrin, 3 hits
SMARTiView protein in SMART
SM01249 KASH, 1 hit
SM00150 SPEC, 4 hits
PROSITEiView protein in PROSITE
PS51049 KASH, 1 hit

Sequencei

Sequence statusi: Fragment.

Q6PI72-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
LCEVLLHDCD ACATDAECDS IQQATRNLDR RWRNICAMSM ERRLKIEETW
60 70 80 90 100
RLWQKFLDDY SRFEDWLEVS ERTAAFPSSS GVLYTVAKEE LKKFEAFQRQ
110 120 130 140 150
VHESLTQLEL INKQYRRLAR ENRTDSACSL RQMVHGGNQR WDDLQKRVTS
160 170 180 190 200
ILRRLKHFIS QREEFETARD SILVWLTEMD LQLTNIEHFS ECDVQAKIKQ
210 220 230 240 250
LKAFQQEISL NHNKIEQIIA QGEQLIEKSE PLDAAVIEEE LDELRRYCQE
260 270 280 290 300
VFGRVERYHK KLIRLPLPDD HDLSDRELDL EDSTALSDLR WQDPSADGMP
310 320 330 340 350
SPQPSSNPSL SLPQPLRSER SGRDTPASVD SIPLEWDHDY DLSRDLESAS
360 370 380 390 400
RTLPSEDEEG EEDKEFYLRG AVGLSDVVIP ENPEAYVKLT ENAIRNTSGD
410 420 430 440 450
PSSLESQMRQ LDKALDDSRF QIQQTANILR SKTPTGPDLD TSYKGYMKLL
460 470 480 490 500
GECSGSIDSV RRLEHKLAEE ESFPGFVNLN STETQTAGVI DRWELLQAQA
510 520 530 540 550
MSKELRMKQN LQKWQQFNSD LNNIWAWLGE TEEELDRLQH LALSTDIHTI
560 570 580 590 600
ESHIKKLKEL QKAVDHRKAI ILSINLCSSE FTQADSKESH DLQDRLSQMN
610 620 630 640 650
GRWDRVCSLL EDWRGLLQDA LMQCQEFHEM SHALLLMLEN IDRRKNEIVP
660 670 680 690 700
IDSTLDPETL QDHHKQLMQI KQELLKSQLR VASLQDMSRQ LLVNAEGSDC
710 720 730 740 750
LEAKEKVHVI GNRLKLLLKE VSHHIKDLEK LLDMSSSQQD LSSWSSADEL
760 770 780 790 800
DTSGSVSPTS GRSTPNRQKS PRGKCSLSQP GPSVSSPKSR STRDGSDSSR
810 820 830 840 850
SDPRPERVGR AFLFRILRAA LPFQLLLLLL IGLTCLVPMS EKDYSCALSN
860
NFARSFHPML RYTNGPPPL
Length:869
Mass (Da):99,771
Last modified:July 19, 2004 - v1
Checksum:i5FD4128551B7109D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC041779 mRNA Translation: AAH41779.1
RefSeqiNP_001073154.1, NM_001079686.1
NP_071310.2, NM_022027.2
UniGeneiMm.331626

Genome annotation databases

GeneIDi64009
KEGGimmu:64009

Similar proteinsi

Entry informationi

Entry nameiQ6PI72_MOUSE
AccessioniPrimary (citable) accession number: Q6PI72
Entry historyiIntegrated into UniProtKB/TrEMBL: July 19, 2004
Last sequence update: July 19, 2004
Last modified: March 28, 2018
This is version 79 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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