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Protein
Submitted name:

Syne1 protein

Gene

Syne1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Syne1 proteinImported
Gene namesi
Name:Syne1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1927152. Syne1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei812 – 83726HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ6PI72.

Expressioni

Gene expression databases

GenevisibleiQ6PI72. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000093587.

Structurei

3D structure databases

ProteinModelPortaliQ6PI72.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini810 – 86960KASHInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IUP1. Eukaryota.
ENOG410YQV5. LUCA.
HOVERGENiHBG056327.
KOiK19326.

Family and domain databases

InterProiIPR012315. KASH.
IPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
IPR030265. SYNE1.
[Graphical view]
PANTHERiPTHR11915:SF267. PTHR11915:SF267. 2 hits.
PfamiPF10541. KASH. 1 hit.
PF00435. Spectrin. 3 hits.
[Graphical view]
SMARTiSM01249. KASH. 1 hit.
SM00150. SPEC. 4 hits.
[Graphical view]
PROSITEiPS51049. KASH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q6PI72-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
LCEVLLHDCD ACATDAECDS IQQATRNLDR RWRNICAMSM ERRLKIEETW
60 70 80 90 100
RLWQKFLDDY SRFEDWLEVS ERTAAFPSSS GVLYTVAKEE LKKFEAFQRQ
110 120 130 140 150
VHESLTQLEL INKQYRRLAR ENRTDSACSL RQMVHGGNQR WDDLQKRVTS
160 170 180 190 200
ILRRLKHFIS QREEFETARD SILVWLTEMD LQLTNIEHFS ECDVQAKIKQ
210 220 230 240 250
LKAFQQEISL NHNKIEQIIA QGEQLIEKSE PLDAAVIEEE LDELRRYCQE
260 270 280 290 300
VFGRVERYHK KLIRLPLPDD HDLSDRELDL EDSTALSDLR WQDPSADGMP
310 320 330 340 350
SPQPSSNPSL SLPQPLRSER SGRDTPASVD SIPLEWDHDY DLSRDLESAS
360 370 380 390 400
RTLPSEDEEG EEDKEFYLRG AVGLSDVVIP ENPEAYVKLT ENAIRNTSGD
410 420 430 440 450
PSSLESQMRQ LDKALDDSRF QIQQTANILR SKTPTGPDLD TSYKGYMKLL
460 470 480 490 500
GECSGSIDSV RRLEHKLAEE ESFPGFVNLN STETQTAGVI DRWELLQAQA
510 520 530 540 550
MSKELRMKQN LQKWQQFNSD LNNIWAWLGE TEEELDRLQH LALSTDIHTI
560 570 580 590 600
ESHIKKLKEL QKAVDHRKAI ILSINLCSSE FTQADSKESH DLQDRLSQMN
610 620 630 640 650
GRWDRVCSLL EDWRGLLQDA LMQCQEFHEM SHALLLMLEN IDRRKNEIVP
660 670 680 690 700
IDSTLDPETL QDHHKQLMQI KQELLKSQLR VASLQDMSRQ LLVNAEGSDC
710 720 730 740 750
LEAKEKVHVI GNRLKLLLKE VSHHIKDLEK LLDMSSSQQD LSSWSSADEL
760 770 780 790 800
DTSGSVSPTS GRSTPNRQKS PRGKCSLSQP GPSVSSPKSR STRDGSDSSR
810 820 830 840 850
SDPRPERVGR AFLFRILRAA LPFQLLLLLL IGLTCLVPMS EKDYSCALSN
860
NFARSFHPML RYTNGPPPL
Length:869
Mass (Da):99,771
Last modified:July 19, 2004 - v1
Checksum:i5FD4128551B7109D
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC041779 mRNA. Translation: AAH41779.1.
RefSeqiNP_001073154.1. NM_001079686.1.
NP_071310.2. NM_022027.2.
UniGeneiMm.331626.

Genome annotation databases

GeneIDi64009.
KEGGimmu:64009.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC041779 mRNA. Translation: AAH41779.1.
RefSeqiNP_001073154.1. NM_001079686.1.
NP_071310.2. NM_022027.2.
UniGeneiMm.331626.

3D structure databases

ProteinModelPortaliQ6PI72.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000093587.

Proteomic databases

PaxDbiQ6PI72.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi64009.
KEGGimmu:64009.

Organism-specific databases

CTDi23345.
MGIiMGI:1927152. Syne1.

Phylogenomic databases

eggNOGiENOG410IUP1. Eukaryota.
ENOG410YQV5. LUCA.
HOVERGENiHBG056327.
KOiK19326.

Miscellaneous databases

ChiTaRSiSyne1. mouse.
SOURCEiSearch...

Gene expression databases

GenevisibleiQ6PI72. MM.

Family and domain databases

InterProiIPR012315. KASH.
IPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
IPR030265. SYNE1.
[Graphical view]
PANTHERiPTHR11915:SF267. PTHR11915:SF267. 2 hits.
PfamiPF10541. KASH. 1 hit.
PF00435. Spectrin. 3 hits.
[Graphical view]
SMARTiSM01249. KASH. 1 hit.
SM00150. SPEC. 4 hits.
[Graphical view]
PROSITEiPS51049. KASH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: EyeImported.

Entry informationi

Entry nameiQ6PI72_MOUSE
AccessioniPrimary (citable) accession number: Q6PI72
Entry historyi
Integrated into UniProtKB/TrEMBL: July 19, 2004
Last sequence update: July 19, 2004
Last modified: June 8, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.