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Q6PGJ3 (Q6PGJ3_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified November 16, 2011. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
L1 cell adhesion molecule EMBL AAH56988.1
Submitted name:
Uncharacterized protein Ensembl ENSMUSP00000099935
Gene names
Name:L1cam Ensembl ENSMUSP00000099935 MGI 96721 EMBL AAH56988.1
ORF Names:RP23-373N8.1-001 EMBL CAM22467.1
OrganismMus musculus (Mouse) EMBL AAH56988.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length1259 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q6PGJ3 [UniParc].

Last modified October 25, 2004. Version 1.
Checksum: 25743C039892A22F

FASTA1,259140,917
        10         20         30         40         50         60 
MVVMLRYVWP LLLCSPCLLI QIPDEYKGHH VLEPPVITEQ SPRRLVVFPT DDISLKCEAR 

        70         80         90        100        110        120 
GRPQVEFRWT KDGIHFKPKE ELGVVVHEAP YSGSFTIEGN NSFAQRFQGI YRCYASNKLG 

       130        140        150        160        170        180 
TAMSHEIQLV AEGAPKWPKE TVKPVEVEEG ESVVLPCNPP PSAAPLRIYW MNSKILHIKQ 

       190        200        210        220        230        240 
DERVSMGQNG DLYFANVLTS DNHSDYICNA HFPGTRTIIQ KEPIDLRVKP TNSMIDRKPR 

       250        260        270        280        290        300 
LLFPTNSSSR LVALQGQSLI LECIAEGFPT PTIKWLHPSD PMPTDRVIYQ NHNKTLQLLN 

       310        320        330        340        350        360 
VGEEDDGEYT CLAENSLGSA RHAYYVTVEA APYWLQKPQS HLYGPGETAR LDCQVQGRPQ 

       370        380        390        400        410        420 
PEITWRINGM SMETVNKDQK YRIEQGSLIL SNVQPSDTMV TQCEARNQHG LLLANAYIYV 

       430        440        450        460        470        480 
VQLPARILTK DNQTYMAVEG STAYLLCKAF GAPVPSVQWL DEEGTTVLQD ERFFPYANGT 

       490        500        510        520        530        540 
LSIRDLQAND TGRYFCQAAN DQNNVTILAN LQVKEATQIT QGPRSAIEKK GARVTFTCQA 

       550        560        570        580        590        600 
SFDPSLQASI TWRGDGRDLQ ERGDSDKYFI EDGKLVIQSL DYSDQGNYSC VASTELDEVE 

       610        620        630        640        650        660 
SRAQLLVVGS PGPVPHLELS DRHLLKQSQV HLSWSPAEDH NSPIEKYDIE FEDKEMAPEK 

       670        680        690        700        710        720 
WFSLGKVPGN QTSTTLKLSP YVHYTFRVTA INKYGPGEPS PVSETVVTPE AAPEKNPVDV 

       730        740        750        760        770        780 
RGEGNETNNM VITWKPLRWM DWNAPQIQYR VQWRPQGKQE TWREQTVSDP FLVVSNTSTF 

       790        800        810        820        830        840 
VPYEIKVQAV NNQGKGPEPQ VTIGYSGEDY PQVSPELEDI TIFNSSTVLV RWRPVDLAQV 

       850        860        870        880        890        900 
KGHLKGYNVT YWWKGSQRKH SKRHIHKSHI VVPANTTSAI LSGLRPYSSY HVEVQAFNGR 

       910        920        930        940        950        960 
GLGPASEWTF STPEGVPGHP EALHLECQSD TSLLLHWQPP LSHNGVLTGY LLSYHPVEGE 

       970        980        990       1000       1010       1020 
SKEQLFFNLS DPELRTHNLT NLNPDLQYRF QLQATTQQGP GEAIVREGGT MALFGKPDFG 

      1030       1040       1050       1060       1070       1080 
NISATAGENY SVVSWVPRKG QCNFRFHILF KALPEGKVSP DHQPQPQYVS YNQSSYTQWN 

      1090       1100       1110       1120       1130       1140 
LQPDTKYEIH LIKEKVLLHH LDVKTNGTGP VRVSTTGSFA SEGWFIAFVS AIILLLLILL 

      1150       1160       1170       1180       1190       1200 
ILCFIKRSKG GKYSVKDKED TQVDSEARPM KDETFGEYRS LESDNEEKAF GSSQPSLNGD 

      1210       1220       1230       1240       1250 
IKPLGSDDSL ADYGGSVDVQ FNEDGSFIGQ YSGKKEKEAA GGNDSSGATS PINPAVALE

« Hide

References

« Hide 'large scale' references
[1]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Mouse Genome Sequencing Consortium
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed: 19468303] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6 Ensembl ENSMUSP00000099935.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6 EMBL AAH56988.1.
Tissue: Brain EMBL AAH56988.1.
[3]Holt K.
Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]Ensembl
Submitted (JUN-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000099935.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AL672002 Genomic DNA. No translation available.
BC056988 mRNA. Translation: AAH56988.1.
AL672094 Genomic DNA. Translation: CAM22467.1.
IPIIPI00785371.
RefSeqNP_032504.3. NM_008478.3.
UniGeneMm.260568.

3D structure databases

HSSPHSSP built from PDB template 1EVT based on UniProtKB P11362.
ProteinModelPortalQ6PGJ3.
SMRQ6PGJ3. Positions 31-1005.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ6PGJ3.

Proteomic databases

PRIDEQ6PGJ3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000102871; ENSMUSP00000099935; ENSMUSG00000031391.
GeneID16728.
KEGGmmu:16728.
UCSCuc009tmv.1. mouse.

Organism-specific databases

CTD3897.
MGIMGI:96721. L1cam.

Phylogenomic databases

HOVERGENHBG000144.
InParanoidQ6PGJ3.
OMAYRVQWRP.

Gene expression databases

ArrayExpressQ6PGJ3.
BgeeQ6PGJ3.
GenevestigatorQ6PGJ3.

Family and domain databases

InterProIPR003961. Fibronectin_type3.
IPR007110. Ig-like.
IPR013783. Ig-like_fold.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
[Graphical view]
Gene3DG3DSA:2.60.40.10. Ig-like_fold. 11 hits.
KOK06550.
PfamPF00041. fn3. 4 hits.
PF07679. I-set. 5 hits.
[Graphical view]
SMARTSM00060. FN3. 4 hits.
SM00409. IG. 1 hit.
SM00408. IGc2. 5 hits.
[Graphical view]
SUPFAMSSF49265. FN_III-like. 4 hits.
PROSITEPS50853. FN3. 5 hits.
PS50835. IG_LIKE. 6 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio290518.
PMAP-CutDBQ6PGJ3.
SOURCESearch...

Entry information

Entry nameQ6PGJ3_MOUSE
AccessionPrimary (citable) accession number: Q6PGJ3
Entry history
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: November 16, 2011
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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