Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein YIF1B

Gene

Yif1b

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YIF1B
Alternative name(s):
YIP1-interacting factor homolog B
Gene namesi
Name:Yif1b
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi735199. Yif1b.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini9 – 153145CytoplasmicSequence analysisAdd
BLAST
Transmembranei154 – 17421HelicalSequence analysisAdd
BLAST
Topological domaini175 – 18612ExtracellularSequence analysisAdd
BLAST
Transmembranei187 – 20721HelicalSequence analysisAdd
BLAST
Topological domaini208 – 23730CytoplasmicSequence analysisAdd
BLAST
Transmembranei238 – 25821HelicalSequence analysisAdd
BLAST
Topological domaini259 – 2591ExtracellularSequence analysis

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 259259Protein YIF1BPRO_0000307260Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineBy similarity
Modified residuei12 – 121PhosphothreonineBy similarity
Modified residuei64 – 641PhosphoserineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PRIDEiQ6PEC3.

Expressioni

Gene expression databases

ExpressionAtlasiQ6PEC3. baseline.

Interactioni

Protein-protein interaction databases

IntActiQ6PEC3. 2 interactions.

Family & Domainsi

Sequence similaritiesi

Belongs to the YIF1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

GeneTreeiENSGT00390000009423.
HOGENOMiHOG000234333.
HOVERGENiHBG053252.
InParanoidiQ6PEC3.
PhylomeDBiQ6PEC3.

Family and domain databases

InterProiIPR005578. Yif1_fam.
[Graphical view]
PANTHERiPTHR14083. PTHR14083. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q6PEC3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MHATGLAAPA GTPRLRKWPS KRRVPVSQPG MADPHQFFDD TSSAPSRGYG
60 70 80 90 100
GQPSPGSLGY PTSSSEAAFL AAPMSNMAMA YGSSLAAQGK ELVDKNIDRF
110 120 130 140 150
IPVSKLKYYF AVDTVYVGKK LGLLVFPYLH QDWEVQYQQD TPVAPRFDIN
160 170 180 190 200
APDLYIPAMA FITYILVAGL ALGTQDRMIG GVLTGLLFGK IGYYLVLAWC
210 220 230 240 250
CVSIFVFMIR TLRLKILAQA AAEGVPVRGA RNQLRMYLTM AVAAAQPVLM

YWLTFHLVR
Length:259
Mass (Da):28,418
Last modified:October 23, 2007 - v2
Checksum:iC918AA2E90B9B204
GO
Isoform 2 (identifier: Q6PEC3-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-19: MHATGLAAPAGTPRLRKWP → MPRPGRGRIAA

Note: No experimental confirmation available.
Show »
Length:251
Mass (Da):27,568
Checksum:i6FAFC4723D18266C
GO

Sequence cautioni

The sequence AAH58153.1 differs from that shown. Reason: Erroneous initiation. Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 1919MHATG…LRKWP → MPRPGRGRIAA in isoform 2. 1 PublicationVSP_028657Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC058153 mRNA. Translation: AAH58153.1. Different initiation.
CB797587 mRNA. No translation available.
RefSeqiNP_001014810.1. NM_001014810.1.
NP_942029.2. NM_198734.2.
UniGeneiRn.154471.

Genome annotation databases

EnsembliENSRNOT00000027987; ENSRNOP00000027987; ENSRNOG00000020616. [Q6PEC3-1]
GeneIDi292768.
KEGGirno:292768.
UCSCiRGD:735199. rat. [Q6PEC3-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC058153 mRNA. Translation: AAH58153.1. Different initiation.
CB797587 mRNA. No translation available.
RefSeqiNP_001014810.1. NM_001014810.1.
NP_942029.2. NM_198734.2.
UniGeneiRn.154471.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ6PEC3. 2 interactions.

Proteomic databases

PRIDEiQ6PEC3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000027987; ENSRNOP00000027987; ENSRNOG00000020616. [Q6PEC3-1]
GeneIDi292768.
KEGGirno:292768.
UCSCiRGD:735199. rat. [Q6PEC3-1]

Organism-specific databases

CTDi90522.
RGDi735199. Yif1b.

Phylogenomic databases

GeneTreeiENSGT00390000009423.
HOGENOMiHOG000234333.
HOVERGENiHBG053252.
InParanoidiQ6PEC3.
PhylomeDBiQ6PEC3.

Miscellaneous databases

PROiQ6PEC3.

Gene expression databases

ExpressionAtlasiQ6PEC3. baseline.

Family and domain databases

InterProiIPR005578. Yif1_fam.
[Graphical view]
PANTHERiPTHR14083. PTHR14083. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Pituitary.
  2. "Amgen rat EST program."
    Amgen EST program
    Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-126 (ISOFORM 1).

Entry informationi

Entry nameiYIF1B_RAT
AccessioniPrimary (citable) accession number: Q6PEC3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: October 23, 2007
Last modified: June 8, 2016
This is version 68 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.