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Protein

Protein YIF1B

Gene

Yif1b

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YIF1B
Alternative name(s):
YIP1-interacting factor homolog B
Gene namesi
Name:Yif1b
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi735199. Yif1b.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini9 – 153CytoplasmicSequence analysisAdd BLAST145
Transmembranei154 – 174HelicalSequence analysisAdd BLAST21
Topological domaini175 – 186ExtracellularSequence analysisAdd BLAST12
Transmembranei187 – 207HelicalSequence analysisAdd BLAST21
Topological domaini208 – 237CytoplasmicSequence analysisAdd BLAST30
Transmembranei238 – 258HelicalSequence analysisAdd BLAST21
Topological domaini259ExtracellularSequence analysis1

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003072601 – 259Protein YIF1BAdd BLAST259

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionineBy similarity1
Modified residuei12PhosphothreonineBy similarity1
Modified residuei64PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PRIDEiQ6PEC3.

Expressioni

Gene expression databases

BgeeiENSRNOG00000020616.
ExpressionAtlasiQ6PEC3. differential.

Interactioni

Protein-protein interaction databases

IntActiQ6PEC3. 2 interactors.

Family & Domainsi

Sequence similaritiesi

Belongs to the YIF1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

GeneTreeiENSGT00390000009423.
HOGENOMiHOG000234333.
HOVERGENiHBG053252.
InParanoidiQ6PEC3.
KOiK20362.
PhylomeDBiQ6PEC3.

Family and domain databases

InterProiIPR005578. Yif1_fam.
[Graphical view]
PANTHERiPTHR14083. PTHR14083. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q6PEC3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MHATGLAAPA GTPRLRKWPS KRRVPVSQPG MADPHQFFDD TSSAPSRGYG
60 70 80 90 100
GQPSPGSLGY PTSSSEAAFL AAPMSNMAMA YGSSLAAQGK ELVDKNIDRF
110 120 130 140 150
IPVSKLKYYF AVDTVYVGKK LGLLVFPYLH QDWEVQYQQD TPVAPRFDIN
160 170 180 190 200
APDLYIPAMA FITYILVAGL ALGTQDRMIG GVLTGLLFGK IGYYLVLAWC
210 220 230 240 250
CVSIFVFMIR TLRLKILAQA AAEGVPVRGA RNQLRMYLTM AVAAAQPVLM

YWLTFHLVR
Length:259
Mass (Da):28,418
Last modified:October 23, 2007 - v2
Checksum:iC918AA2E90B9B204
GO
Isoform 2 (identifier: Q6PEC3-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-19: MHATGLAAPAGTPRLRKWP → MPRPGRGRIAA

Note: No experimental confirmation available.
Show »
Length:251
Mass (Da):27,568
Checksum:i6FAFC4723D18266C
GO

Sequence cautioni

The sequence AAH58153 differs from that shown. Reason: Erroneous initiation.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0286571 – 19MHATG…LRKWP → MPRPGRGRIAA in isoform 2. 1 PublicationAdd BLAST19

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC058153 mRNA. Translation: AAH58153.1. Different initiation.
CB797587 mRNA. No translation available.
RefSeqiNP_001014810.1. NM_001014810.1.
NP_942029.2. NM_198734.2.
UniGeneiRn.154471.

Genome annotation databases

EnsembliENSRNOT00000027987; ENSRNOP00000027987; ENSRNOG00000020616. [Q6PEC3-1]
GeneIDi292768.
KEGGirno:292768.
UCSCiRGD:735199. rat. [Q6PEC3-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC058153 mRNA. Translation: AAH58153.1. Different initiation.
CB797587 mRNA. No translation available.
RefSeqiNP_001014810.1. NM_001014810.1.
NP_942029.2. NM_198734.2.
UniGeneiRn.154471.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ6PEC3. 2 interactors.

Proteomic databases

PRIDEiQ6PEC3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000027987; ENSRNOP00000027987; ENSRNOG00000020616. [Q6PEC3-1]
GeneIDi292768.
KEGGirno:292768.
UCSCiRGD:735199. rat. [Q6PEC3-1]

Organism-specific databases

CTDi90522.
RGDi735199. Yif1b.

Phylogenomic databases

GeneTreeiENSGT00390000009423.
HOGENOMiHOG000234333.
HOVERGENiHBG053252.
InParanoidiQ6PEC3.
KOiK20362.
PhylomeDBiQ6PEC3.

Miscellaneous databases

PROiQ6PEC3.

Gene expression databases

BgeeiENSRNOG00000020616.
ExpressionAtlasiQ6PEC3. differential.

Family and domain databases

InterProiIPR005578. Yif1_fam.
[Graphical view]
PANTHERiPTHR14083. PTHR14083. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYIF1B_RAT
AccessioniPrimary (citable) accession number: Q6PEC3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: October 23, 2007
Last modified: November 30, 2016
This is version 72 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.