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Protein

60S ribosomal protein L10

Gene

Rpl10

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • liver regeneration Source: RGD
  • translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L10
Gene namesi
Name:Rpl10
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi621178. Rpl10.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved1 Publication
Chaini2 – 21421360S ribosomal protein L10PRO_0000147110Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei32 – 321CitrullineBy similarity
Cross-linki188 – 188Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity

Post-translational modificationi

Citrullinated by PADI4.By similarity

Keywords - PTMi

Citrullination, Isopeptide bond, Ubl conjugation

Proteomic databases

PaxDbiQ6PDV7.
PRIDEiQ6PDV7.

PTM databases

iPTMnetiQ6PDV7.

Expressioni

Gene expression databases

GenevisibleiQ6PDV7. RN.

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S) (By similarity).By similarity

Protein-protein interaction databases

IntActiQ6PDV7. 1 interaction.
MINTiMINT-4132586.
STRINGi10116.ENSRNOP00000053123.

Structurei

3D structure databases

ProteinModelPortaliQ6PDV7.
SMRiQ6PDV7. Positions 3-207.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L10e family.Curated

Phylogenomic databases

eggNOGiKOG0857. Eukaryota.
COG0197. LUCA.
GeneTreeiENSGT00390000003897.
HOGENOMiHOG000223754.
HOVERGENiHBG002287.
InParanoidiQ6PDV7.
KOiK02866.
OMAiEHKMATG.
OrthoDBiEOG76MK97.
PhylomeDBiQ6PDV7.
TreeFamiTF300082.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
InterProiIPR001197. Ribosomal_L10e.
IPR016180. Ribosomal_L10e/L16.
IPR018255. Ribosomal_L10e_CS.
[Graphical view]
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PIRSFiPIRSF005590. Ribosomal_L10. 1 hit.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR00279. uL16_euk_arch. 1 hit.
PROSITEiPS01257. RIBOSOMAL_L10E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q6PDV7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRRPARCYR YCKNKPYPKS RFCRGVPDAK IRIFDLGRKK AKVDEFPLCG
60 70 80 90 100
HMVSDEYEQL SSEALEAARI CANKYMVKSC GKDGFHIRVR LHPFHVIRIN
110 120 130 140 150
KMLSCAGADR LQTGMRGAFG KPQGTVARVH IGQVIMSIRT KLQNKEHVIE
160 170 180 190 200
ALRRAKFKFP GRQKIHISKK WGFTKFNADE FEDMVAEKRL IPDGCGVKYI
210
PNRGPLDKWR ALHS
Length:214
Mass (Da):24,604
Last modified:January 23, 2007 - v3
Checksum:i0860CECC91DF74FE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87106 mRNA. Translation: CAA60587.1.
BC058467 mRNA. Translation: AAH58467.1.
PIRiJC4911.
RefSeqiNP_112362.1. NM_031100.1.
UniGeneiRn.102157.

Genome annotation databases

EnsembliENSRNOT00000083951; ENSRNOP00000070105; ENSRNOG00000056765.
GeneIDi81764.
KEGGirno:81764.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87106 mRNA. Translation: CAA60587.1.
BC058467 mRNA. Translation: AAH58467.1.
PIRiJC4911.
RefSeqiNP_112362.1. NM_031100.1.
UniGeneiRn.102157.

3D structure databases

ProteinModelPortaliQ6PDV7.
SMRiQ6PDV7. Positions 3-207.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ6PDV7. 1 interaction.
MINTiMINT-4132586.
STRINGi10116.ENSRNOP00000053123.

PTM databases

iPTMnetiQ6PDV7.

Proteomic databases

PaxDbiQ6PDV7.
PRIDEiQ6PDV7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000083951; ENSRNOP00000070105; ENSRNOG00000056765.
GeneIDi81764.
KEGGirno:81764.

Organism-specific databases

CTDi6134.
RGDi621178. Rpl10.

Phylogenomic databases

eggNOGiKOG0857. Eukaryota.
COG0197. LUCA.
GeneTreeiENSGT00390000003897.
HOGENOMiHOG000223754.
HOVERGENiHBG002287.
InParanoidiQ6PDV7.
KOiK02866.
OMAiEHKMATG.
OrthoDBiEOG76MK97.
PhylomeDBiQ6PDV7.
TreeFamiTF300082.

Miscellaneous databases

NextBioi615558.
PROiQ6PDV7.

Gene expression databases

GenevisibleiQ6PDV7. RN.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
InterProiIPR001197. Ribosomal_L10e.
IPR016180. Ribosomal_L10e/L16.
IPR018255. Ribosomal_L10e_CS.
[Graphical view]
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PIRSFiPIRSF005590. Ribosomal_L10. 1 hit.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR00279. uL16_euk_arch. 1 hit.
PROSITEiPS01257. RIBOSOMAL_L10E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The primary structure of rat ribosomal protein L10: relationship to a Jun-binding protein and to a putative Wilms' tumor suppressor."
    Chan Y.-L., Diaz J.-J., Denoroy L., Madjar J.-J., Wool I.G.
    Biochem. Biophys. Res. Commun. 225:952-956(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 2-29.
    Strain: Sprague-Dawley.
    Tissue: Liver.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Pituitary.

Entry informationi

Entry nameiRL10_RAT
AccessioniPrimary (citable) accession number: Q6PDV7
Secondary accession number(s): P45634
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: January 23, 2007
Last modified: May 11, 2016
This is version 91 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.