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Q6PCS8

- Q6PCS8_MOUSE

UniProt

Q6PCS8 - Q6PCS8_MOUSE

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Protein
Submitted name:

Protein Zbtb40

Gene
Zbtb40
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. nucleic acid binding Source: InterPro

GO - Biological processi

  1. cellular response to DNA damage stimulus Source: UniProtKB
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zbtb40Imported
Submitted name:
Zinc finger and BTB domain containing 40Imported
Gene namesi
Name:Zbtb40Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 4

Organism-specific databases

MGIiMGI:2682254. Zbtb40.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotations

Expressioni

Gene expression databases

GenevestigatoriQ6PCS8.

Family & Domainsi

Sequence similaritiesi

Contains 1 BTB (POZ) domain.UniRule annotation
Contains BTB (POZ) domain.SAAS annotations

Keywords - Domaini

RepeatSAAS annotations, Zinc-fingerSAAS annotations

Phylogenomic databases

GeneTreeiENSGT00740000115612.
HOGENOMiHOG000143421.
HOVERGENiHBG058697.
InParanoidiQ6PCS8.
KOiK10512.
OMAiCVTQLRP.
OrthoDBiEOG7BGHJW.
TreeFamiTF350897.

Family and domain databases

Gene3Di3.30.160.60. 7 hits.
3.30.710.10. 1 hit.
InterProiIPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00651. BTB. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00225. BTB. 1 hit.
SM00355. ZnF_C2H2. 13 hits.
[Graphical view]
SUPFAMiSSF54695. SSF54695. 1 hit.
PROSITEiPS50097. BTB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 12 hits.
PS50157. ZINC_FINGER_C2H2_2. 11 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6PCS8-1 [UniParc]FASTAAdd to Basket

« Hide

MELPSYSQQL LLQLYALCKE QRFCDCTISV GNIYFRAHKP VLAAASLLFK     50
TLLDSTDAIS IDASVVSPEE FALLLEMTYT GKLPVGKHNF SKIISLADSL 100
QMFDVAVSCK NLLTNLVNCS VQGQVVRDVS VLSSEAGNKE SEKPQVEALS 150
SEGAEEPSSS PEVSAVPAGP EKAKTQDVIN IATQEINADP PVAQEVQVAA 200
EITGATPHTA EVCSPSPVGQ IPSETKEVNT EAECETKQDQ LTLLLEHESV 250
FSDAALLTPD TLRRLAGCSE IEGPQKETII ECLTSEGGSS AFQRILDKVH 300
DGSLDVQVAL SLVRLYQEST PAEKVSQIQP EGSAGEGKTL SVLLLEHKED 350
LIQCVTQLRP IVEFLETAKE EFLPDSEKRV IQSCCEGRTP KEMIENLLHR 400
VTEEKTLPAK SLVKLLQAVR TAFPNLDLLL DNLQKGAGSA GTTGLARVSC 450
ESEWTDEPRP VCIPADRVDG SSPSPDAYGA ELLRKYHENL SEILIDNQVL 500
LKVISRMQSL APGDREVMQT LVKQGSGSGG FSSLMLAALE RQTLSATAIW 550
QLLLAVEETE TRPLNLLLEE VGKEPGAGAF FRAVTAPEST VLEAILRHSK 600
LLREAIQQTA GCERLSSEEE HLAETVQEML SISSETVSPE ASLRAVLSKA 650
MEKSVSASVV CHLLCSVHKS FPGLQPLMQE LAHVGFLTKE SGEERWKVTD 700
GLHPGAKDKV EEVAKATGED CQANEQKEQG EPGPVPEQPE KDTSASPDSA 750
KKSFVCKACD KSFHFYCRLK VHMKRCRVAK SRQVQSEEGS ETKGSEKGLE 800
KQQPDARGTG GEPDAPKKKK KRLPVTCDLC GREFAHASGM QYHKLTEHFD 850
EKPFSCEECG AKFAANSTLK NHLRLHTGDR PFMCKHCLMT FTQASALAYH 900
TKKKHSEGKM YACQYCDAVF AQSIELSRHV RTHTGDKPYV CRDCGKGFRQ 950
ANGLSIHLHT FHTDIEDPYD CKKCRMSFST LQDHRKHIHE VHAKEYHPCP 1000
TCGKIFSAPS MLERHMVTHV GGKPFSCGIC NKAYQQLSGL WYHNRTHHPD 1050
VFAAQNHRSP KFSSLQCSSC DKTFSNTVEH KKHIKTEHTD VKFHECDQCK 1100
ELFPTPALLQ VHVKCQHSGS QPFRCLYCAA TFRFPGALQH HVTTEHFKQS 1150
ESTFPCELCG ELFTSQAQLD SHLESEHPKV AGTESQAAAS RMVQVIRAPE 1200
PAAPAEQVIT LEETQLAGSQ VFVTLPDSQT SQNSSELVAV TVEDLLDGTV 1250
TLICGEAK 1258
Length:1,258
Mass (Da):138,167
Last modified:July 5, 2004 - v1
Checksum:i469EA921CEE4B821
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL627214 Genomic DNA. No translation available.
AL671011 Genomic DNA. No translation available.
BC059177 mRNA. Translation: AAH59177.1.
RefSeqiNP_937891.1. NM_198248.1.
UniGeneiMm.31068.

Genome annotation databases

EnsembliENSMUST00000049583; ENSMUSP00000061899; ENSMUSG00000060862.
GeneIDi230848.
KEGGimmu:230848.
UCSCiuc008vit.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL627214 Genomic DNA. No translation available.
AL671011 Genomic DNA. No translation available.
BC059177 mRNA. Translation: AAH59177.1 .
RefSeqi NP_937891.1. NM_198248.1.
UniGenei Mm.31068.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000049583 ; ENSMUSP00000061899 ; ENSMUSG00000060862 .
GeneIDi 230848.
KEGGi mmu:230848.
UCSCi uc008vit.1. mouse.

Organism-specific databases

CTDi 9923.
MGIi MGI:2682254. Zbtb40.

Phylogenomic databases

GeneTreei ENSGT00740000115612.
HOGENOMi HOG000143421.
HOVERGENi HBG058697.
InParanoidi Q6PCS8.
KOi K10512.
OMAi CVTQLRP.
OrthoDBi EOG7BGHJW.
TreeFami TF350897.

Miscellaneous databases

NextBioi 380210.
PROi Q6PCS8.
SOURCEi Search...

Gene expression databases

Genevestigatori Q6PCS8.

Family and domain databases

Gene3Di 3.30.160.60. 7 hits.
3.30.710.10. 1 hit.
InterProi IPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF00651. BTB. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view ]
SMARTi SM00225. BTB. 1 hit.
SM00355. ZnF_C2H2. 13 hits.
[Graphical view ]
SUPFAMi SSF54695. SSF54695. 1 hit.
PROSITEi PS50097. BTB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 12 hits.
PS50157. ZINC_FINGER_C2H2_2. 11 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6Imported.
    Tissue: BrainImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ6PCS8_MOUSE
AccessioniPrimary (citable) accession number: Q6PCS8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 19, 2014
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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