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Q6PCS8 (Q6PCS8_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 103. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Zinc finger and BTB domain containing 40 EMBL AAH59177.1
Gene names
Name:Zbtb40 EMBL AAH59177.1 MGI 2682254 Ensembl ENSMUSP00000061899
OrganismMus musculus (Mouse) [Reference proteome] EMBL AAH59177.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length1258 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 BTB (POZ) domain. RuleBase RU004401

Contains BTB (POZ) domain. SAAS SAAS013069

Sequences

Sequence LengthMass (Da)Tools
Q6PCS8 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 469EA921CEE4B821

FASTA1,258138,167
        10         20         30         40         50         60 
MELPSYSQQL LLQLYALCKE QRFCDCTISV GNIYFRAHKP VLAAASLLFK TLLDSTDAIS 

        70         80         90        100        110        120 
IDASVVSPEE FALLLEMTYT GKLPVGKHNF SKIISLADSL QMFDVAVSCK NLLTNLVNCS 

       130        140        150        160        170        180 
VQGQVVRDVS VLSSEAGNKE SEKPQVEALS SEGAEEPSSS PEVSAVPAGP EKAKTQDVIN 

       190        200        210        220        230        240 
IATQEINADP PVAQEVQVAA EITGATPHTA EVCSPSPVGQ IPSETKEVNT EAECETKQDQ 

       250        260        270        280        290        300 
LTLLLEHESV FSDAALLTPD TLRRLAGCSE IEGPQKETII ECLTSEGGSS AFQRILDKVH 

       310        320        330        340        350        360 
DGSLDVQVAL SLVRLYQEST PAEKVSQIQP EGSAGEGKTL SVLLLEHKED LIQCVTQLRP 

       370        380        390        400        410        420 
IVEFLETAKE EFLPDSEKRV IQSCCEGRTP KEMIENLLHR VTEEKTLPAK SLVKLLQAVR 

       430        440        450        460        470        480 
TAFPNLDLLL DNLQKGAGSA GTTGLARVSC ESEWTDEPRP VCIPADRVDG SSPSPDAYGA 

       490        500        510        520        530        540 
ELLRKYHENL SEILIDNQVL LKVISRMQSL APGDREVMQT LVKQGSGSGG FSSLMLAALE 

       550        560        570        580        590        600 
RQTLSATAIW QLLLAVEETE TRPLNLLLEE VGKEPGAGAF FRAVTAPEST VLEAILRHSK 

       610        620        630        640        650        660 
LLREAIQQTA GCERLSSEEE HLAETVQEML SISSETVSPE ASLRAVLSKA MEKSVSASVV 

       670        680        690        700        710        720 
CHLLCSVHKS FPGLQPLMQE LAHVGFLTKE SGEERWKVTD GLHPGAKDKV EEVAKATGED 

       730        740        750        760        770        780 
CQANEQKEQG EPGPVPEQPE KDTSASPDSA KKSFVCKACD KSFHFYCRLK VHMKRCRVAK 

       790        800        810        820        830        840 
SRQVQSEEGS ETKGSEKGLE KQQPDARGTG GEPDAPKKKK KRLPVTCDLC GREFAHASGM 

       850        860        870        880        890        900 
QYHKLTEHFD EKPFSCEECG AKFAANSTLK NHLRLHTGDR PFMCKHCLMT FTQASALAYH 

       910        920        930        940        950        960 
TKKKHSEGKM YACQYCDAVF AQSIELSRHV RTHTGDKPYV CRDCGKGFRQ ANGLSIHLHT 

       970        980        990       1000       1010       1020 
FHTDIEDPYD CKKCRMSFST LQDHRKHIHE VHAKEYHPCP TCGKIFSAPS MLERHMVTHV 

      1030       1040       1050       1060       1070       1080 
GGKPFSCGIC NKAYQQLSGL WYHNRTHHPD VFAAQNHRSP KFSSLQCSSC DKTFSNTVEH 

      1090       1100       1110       1120       1130       1140 
KKHIKTEHTD VKFHECDQCK ELFPTPALLQ VHVKCQHSGS QPFRCLYCAA TFRFPGALQH 

      1150       1160       1170       1180       1190       1200 
HVTTEHFKQS ESTFPCELCG ELFTSQAQLD SHLESEHPKV AGTESQAAAS RMVQVIRAPE 

      1210       1220       1230       1240       1250 
PAAPAEQVIT LEETQLAGSQ VFVTLPDSQT SQNSSELVAV TVEDLLDGTV TLICGEAK 

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6 EMBL AAH59177.1.
Tissue: Brain EMBL AAH59177.1.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000061899.
[3]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000061899.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL627214 Genomic DNA. No translation available.
AL671011 Genomic DNA. No translation available.
BC059177 mRNA. Translation: AAH59177.1.
RefSeqNP_937891.1. NM_198248.1.
UniGeneMm.31068.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000049583; ENSMUSP00000061899; ENSMUSG00000060862.
GeneID230848.
KEGGmmu:230848.
UCSCuc008vit.1. mouse.

Organism-specific databases

CTD9923.
MGIMGI:2682254. Zbtb40.

Phylogenomic databases

GeneTreeENSGT00740000115612.
HOGENOMHOG000143421.
HOVERGENHBG058697.
InParanoidQ6PCS8.
KOK10512.
OMACVTQLRP.
OrthoDBEOG7BGHJW.
TreeFamTF350897.

Gene expression databases

GenevestigatorQ6PCS8.

Family and domain databases

Gene3D3.30.160.60. 7 hits.
3.30.710.10. 1 hit.
InterProIPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamPF00651. BTB. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTSM00225. BTB. 1 hit.
SM00355. ZnF_C2H2. 13 hits.
[Graphical view]
SUPFAMSSF54695. SSF54695. 1 hit.
PROSITEPS50097. BTB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 12 hits.
PS50157. ZINC_FINGER_C2H2_2. 11 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio380210.
PROQ6PCS8.
SOURCESearch...

Entry information

Entry nameQ6PCS8_MOUSE
AccessionPrimary (citable) accession number: Q6PCS8
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 19, 2014
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)