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Protein

60S ribosomal protein L10a

Gene

rpl10a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DRE-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DRE-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DRE-72689. Formation of a pool of free 40S subunits.
R-DRE-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DRE-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DRE-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L10a
Gene namesi
Name:rpl10a
ORF Names:zgc:73082
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 8

Organism-specific databases

ZFINiZDB-GENE-030131-2025. rpl10a.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 21621660S ribosomal protein L10aPRO_0000125824Add
BLAST

Proteomic databases

PaxDbiQ6PC69.
PRIDEiQ6PC69.

Expressioni

Gene expression databases

BgeeiQ6PC69.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000062982.

Structurei

3D structure databases

ProteinModelPortaliQ6PC69.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L1P family.Curated

Phylogenomic databases

eggNOGiKOG1570. Eukaryota.
COG0081. LUCA.
GeneTreeiENSGT00390000008767.
HOGENOMiHOG000207014.
HOVERGENiHBG055239.
InParanoidiQ6PC69.
KOiK02865.
OMAiDFFIAQA.
OrthoDBiEOG7S7SG8.
PhylomeDBiQ6PC69.
TreeFamiTF300791.

Family and domain databases

Gene3Di3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
InterProiIPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamiPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMiSSF56808. SSF56808. 1 hit.
PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6PC69-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVSRDTLY EAVKEVQAGS RRKKRKFLET VELQISLKNY DPQKDKRFSG
60 70 80 90 100
TVRLKTTPRP KFSVCVLGDQ QHCDEAKAAE LPHMDIEALK KLNKNKKLVK
110 120 130 140 150
KLAKKYDAFL ASESLIKQIP RILGPGLNKA GKFPSLLTHN ENLGTKVDEV
160 170 180 190 200
KSTIKFQMKK VLCLAVAVGH VKMSEEELVY NIHLAVNFLV SLLKKNWQNV
210
RALYIKSTMG KPQRLY
Length:216
Mass (Da):24,622
Last modified:July 5, 2004 - v1
Checksum:iA7495BCA5FE3DC0B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti61 – 611K → Q in AAH71510 (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC059454 mRNA. Translation: AAH59454.1.
BC071510 mRNA. Translation: AAH71510.1.
RefSeqiNP_955930.1. NM_199636.1.
UniGeneiDr.26808.

Genome annotation databases

EnsembliENSDART00000062983; ENSDARP00000062982; ENSDARG00000042905.
GeneIDi323305.
KEGGidre:323305.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC059454 mRNA. Translation: AAH59454.1.
BC071510 mRNA. Translation: AAH71510.1.
RefSeqiNP_955930.1. NM_199636.1.
UniGeneiDr.26808.

3D structure databases

ProteinModelPortaliQ6PC69.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000062982.

Proteomic databases

PaxDbiQ6PC69.
PRIDEiQ6PC69.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000062983; ENSDARP00000062982; ENSDARG00000042905.
GeneIDi323305.
KEGGidre:323305.

Organism-specific databases

CTDi4736.
ZFINiZDB-GENE-030131-2025. rpl10a.

Phylogenomic databases

eggNOGiKOG1570. Eukaryota.
COG0081. LUCA.
GeneTreeiENSGT00390000008767.
HOGENOMiHOG000207014.
HOVERGENiHBG055239.
InParanoidiQ6PC69.
KOiK02865.
OMAiDFFIAQA.
OrthoDBiEOG7S7SG8.
PhylomeDBiQ6PC69.
TreeFamiTF300791.

Enzyme and pathway databases

ReactomeiR-DRE-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DRE-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DRE-72689. Formation of a pool of free 40S subunits.
R-DRE-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DRE-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DRE-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi20808180.
PROiQ6PC69.

Gene expression databases

BgeeiQ6PC69.

Family and domain databases

Gene3Di3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
InterProiIPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamiPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMiSSF56808. SSF56808. 1 hit.
PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Eye.

Entry informationi

Entry nameiRL10A_DANRE
AccessioniPrimary (citable) accession number: Q6PC69
Secondary accession number(s): Q6IQA0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 31, 2004
Last sequence update: July 5, 2004
Last modified: December 9, 2015
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.