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Q6PC19 (SSU72_DANRE) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
RNA polymerase II subunit A C-terminal domain phosphatase SSU72

Short name=CTD phosphatase SSU72
EC=3.1.3.16
Gene names
Name:ssu72
ORF Names:zgc:73143
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome]
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Protein attributes

Sequence length194 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination By similarity.

Catalytic activity

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Subcellular location

Nucleus By similarity. Cytoplasm By similarity. Note: Predominantly in the cytosol By similarity.

Sequence similarities

Belongs to the SSU72 phosphatase family.

Ontologies

Keywords
   Biological processmRNA processing
   Cellular componentCytoplasm
Nucleus
   DomainCoiled coil
   Molecular functionHydrolase
Protein phosphatase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processmRNA processing

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

nucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionphosphoprotein phosphatase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 194194RNA polymerase II subunit A C-terminal domain phosphatase SSU72
PRO_0000330016

Regions

Coiled coil160 – 18526 Potential

Sequences

Sequence LengthMass (Da)Tools
Q6PC19 [UniParc].

Last modified July 5, 2004. Version 1.
Checksum: 288F8BE70DBD7880

FASTA19422,793
        10         20         30         40         50         60 
MPPHPLRVAV VCSSNQNRSM EAHNILSKRG FDVRSFGTGT HVKLPGPAPD KPNIYDFKTT 

        70         80         90        100        110        120 
YEQMYNDLVR KDKELYTQNG ILHMLDRNKR IKSRPERFQS CRDQFDLVIT CEERVYDQVL 

       130        140        150        160        170        180 
EDLNSREQES FQPVHVINVD IQDNHEEATL GAFLICELCQ CIQHTDDMEN EMDELLQEFE 

       190 
EKSHRPFLHS VCFY 

« Hide

References

[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: Wild-type.
Tissue: Eye.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC059504 mRNA. Translation: AAH59504.1.
RefSeqNP_957022.1. NM_200728.1.
UniGeneDr.76327.

3D structure databases

ProteinModelPortalQ6PC19.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ6PC19.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000041895; ENSDARP00000041894; ENSDARG00000031216.
GeneID393701.
KEGGdre:393701.

Organism-specific databases

CTD29101.
ZFINZDB-GENE-040426-1689. ssu72.

Phylogenomic databases

GeneTreeENSGT00390000010165.
HOGENOMHOG000183445.
HOVERGENHBG059831.
InParanoidQ6PC19.
KOK15544.
OMANRPFLHT.
OrthoDBEOG7C2R2M.
PhylomeDBQ6PC19.
TreeFamTF300194.

Gene expression databases

BgeeQ6PC19.

Family and domain databases

InterProIPR006811. RNA_pol_II_suA.
[Graphical view]
PANTHERPTHR20383. PTHR20383. 1 hit.
PfamPF04722. Ssu72. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20814704.
PROQ6PC19.

Entry information

Entry nameSSU72_DANRE
AccessionPrimary (citable) accession number: Q6PC19
Entry history
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: July 5, 2004
Last modified: April 16, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families