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Protein

Volume-regulated anion channel subunit LRRC8B

Gene

LRRC8B

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Non-essential component of the volume-regulated anion channel (VRAC, also named VSOAC channel), an anion channel required to maintain a constant cell volume in response to extracellular or intracellular osmotic changes. The VRAC channel conducts iodide better than chloride and may also conduct organic osmolytes like taurine. Channel activity requires LRRC8A plus at least one other family member (LRRC8B, LRRC8C, LRRC8D or LRRC8E); channel characteristics depend on the precise subunit composition.2 Publications

GO - Biological processi

  • anion transmembrane transport Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Ion channel

Keywords - Biological processi

Ion transport, Transport

Protein family/group databases

TCDBi1.A.25.3.1. the gap junction-forming innexin (innexin) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Volume-regulated anion channel subunit LRRC8B
Alternative name(s):
Leucine-rich repeat-containing protein 8B
T-cell activation leucine repeat-rich protein
Short name:
TA-LRRP
Gene namesi
Name:LRRC8B
Synonyms:KIAA0231
ORF Names:UNQ6413/PRO21207
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

HGNCiHGNC:30692. LRRC8B.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2525CytoplasmicSequence analysisAdd
BLAST
Transmembranei26 – 4621HelicalSequence analysisAdd
BLAST
Topological domaini47 – 11973ExtracellularSequence analysisAdd
BLAST
Transmembranei120 – 14021HelicalSequence analysisAdd
BLAST
Topological domaini141 – 261121CytoplasmicSequence analysisAdd
BLAST
Transmembranei262 – 28221HelicalSequence analysisAdd
BLAST
Topological domaini283 – 30725ExtracellularSequence analysisAdd
BLAST
Transmembranei308 – 32821HelicalSequence analysisAdd
BLAST
Topological domaini329 – 803475CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • cytoplasm Source: UniProtKB
  • endoplasmic reticulum membrane Source: UniProtKB-SubCell
  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Endoplasmic reticulum, Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142671535.

Polymorphism and mutation databases

BioMutaiLRRC8B.
DMDMi88911355.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 803803Volume-regulated anion channel subunit LRRC8BPRO_0000076245Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi78 – 781N-linked (GlcNAc...)Sequence analysis
Modified residuei186 – 1861PhosphoserineBy similarity
Modified residuei196 – 1961PhosphoserineBy similarity

Keywords - PTMi

Glycoprotein, Phosphoprotein

Proteomic databases

EPDiQ6P9F7.
MaxQBiQ6P9F7.
PaxDbiQ6P9F7.
PeptideAtlasiQ6P9F7.
PRIDEiQ6P9F7.

PTM databases

iPTMnetiQ6P9F7.
PhosphoSiteiQ6P9F7.

Expressioni

Gene expression databases

BgeeiENSG00000197147.
CleanExiHS_LRRC8B.
ExpressionAtlasiQ6P9F7. baseline and differential.
GenevisibleiQ6P9F7. HS.

Organism-specific databases

HPAiHPA017950.

Interactioni

Subunit structurei

Heterooligomer; heterooligomerizes with other LRRC8 proteins (LRRC8A, LRRC8C, LRRC8D and/or LRRC8E), possibly to form a heterohexamer (PubMed:24790029, PubMed:26824658). In vivo, the subunit composition may depend primarily on expression levels, and heterooligomeric channels containing various proportions of the different LRRC8 proteins may coexist (Probable).Curated2 Publications

Protein-protein interaction databases

BioGridi117054. 21 interactions.
DIPiDIP-61361N.
IntActiQ6P9F7. 1 interaction.
STRINGi9606.ENSP00000332674.

Structurei

3D structure databases

ProteinModelPortaliQ6P9F7.
SMRiQ6P9F7. Positions 379-803.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati464 – 48623LRR 1Add
BLAST
Repeati488 – 50922LRR 2Add
BLAST
Repeati511 – 53222LRR 3Add
BLAST
Repeati539 – 55921LRR 4Add
BLAST
Repeati562 – 58221LRR 5Add
BLAST
Repeati586 – 60722LRR 6Add
BLAST
Repeati609 – 63022LRR 7Add
BLAST
Repeati634 – 65522LRR 8Add
BLAST
Repeati657 – 67822LRR 9Add
BLAST
Repeati680 – 70122LRR 10Add
BLAST
Repeati703 – 72422LRR 11Add
BLAST
Repeati726 – 74722LRR 12Add
BLAST
Repeati749 – 77123LRR 13Add
BLAST

Sequence similaritiesi

Belongs to the LRRC8 family.Curated
Contains 13 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129676.
HOGENOMiHOG000231806.
HOVERGENiHBG052360.
InParanoidiQ6P9F7.
OMAiNSQDKVE.
OrthoDBiEOG091G01ER.
PhylomeDBiQ6P9F7.
TreeFamiTF331443.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR026906. LRR_5.
IPR021040. LRRC8_Pannexin_like.
[Graphical view]
PfamiPF13306. LRR_5. 1 hit.
PF13855. LRR_8. 1 hit.
PF12534. Pannexin_like. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 8 hits.
[Graphical view]
PROSITEiPS51450. LRR. 9 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6P9F7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MITLTELKCL ADAQSSYHIL KPWWDVFWYY ITLIMLLVAV LAGALQLTQS
60 70 80 90 100
RVLCCLPCKV EFDNHCAVPW DILKASMNTS SNPGTPLPLP LRIQNDLHRQ
110 120 130 140 150
QYSYIDAVCY EKQLHWFAKF FPYLVLLHTL IFAACSNFWL HYPSTSSRLE
160 170 180 190 200
HFVAILHKCF DSPWTTRALS ETVAEQSVRP LKLSKSKILL SSSGCSADID
210 220 230 240 250
SGKQSLPYPQ PGLESAGIES PTSSVLDKKE GEQAKAIFEK VKRFRMHVEQ
260 270 280 290 300
KDIIYRVYLK QIIVKVILFV LIITYVPYFL THITLEIDCS VDVQAFTGYK
310 320 330 340 350
RYQCVYSLAE IFKVLASFYV ILVILYGLTS SYSLWWMLRS SLKQYSFEAL
360 370 380 390 400
REKSNYSDIP DVKNDFAFIL HLADQYDPLY SKRFSIFLSE VSENKLKQIN
410 420 430 440 450
LNNEWTVEKL KSKLVKNAQD KIELHLFMLN GLPDNVFELT EMEVLSLELI
460 470 480 490 500
PEVKLPSAVS QLVNLKELRV YHSSLVVDHP ALAFLEENLK ILRLKFTEMG
510 520 530 540 550
KIPRWVFHLK NLKELYLSGC VLPEQLSTMQ LEGFQDLKNL RTLYLKSSLS
560 570 580 590 600
RIPQVVTDLL PSLQKLSLDN EGSKLVVLNN LKKMVNLKSL ELISCDLERI
610 620 630 640 650
PHSIFSLNNL HELDLRENNL KTVEEIISFQ HLQNLSCLKL WHNNIAYIPA
660 670 680 690 700
QIGALSNLEQ LSLDHNNIEN LPLQLFLCTK LHYLDLSYNH LTFIPEEIQY
710 720 730 740 750
LSNLQYFAVT NNNIEMLPDG LFQCKKLQCL LLGKNSLMNL SPHVGELSNL
760 770 780 790 800
THLELIGNYL ETLPPELEGC QSLKRNCLIV EENLLNTLPL PVTERLQTCL

DKC
Length:803
Mass (Da):92,390
Last modified:February 7, 2006 - v2
Checksum:i9006CE628F427EB9
GO

Sequence cautioni

The sequence BAA13220 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti225 – 2251V → G in AAQ88479 (PubMed:12975309).Curated
Sequence conflicti626 – 6261Missing in AAQ88479 (PubMed:12975309).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti288 – 2881D → N.
Corresponds to variant rs17131746 [ dbSNP | Ensembl ].
VAR_051126
Natural varianti419 – 4191Q → K.1 Publication
Corresponds to variant rs17855025 [ dbSNP | Ensembl ].
VAR_025275
Natural varianti469 – 4691R → H.
Corresponds to variant rs3795832 [ dbSNP | Ensembl ].
VAR_051127
Natural varianti689 – 6891N → S.
Corresponds to variant rs12747447 [ dbSNP | Ensembl ].
VAR_051128

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF385436 mRNA. Translation: AAM43837.1.
D86984 mRNA. Translation: BAA13220.2. Different initiation.
AY358112 mRNA. Translation: AAQ88479.1.
CH471097 Genomic DNA. Translation: EAW73137.1.
CH471097 Genomic DNA. Translation: EAW73138.1.
BC030607 mRNA. Translation: AAH30607.1.
BC060782 mRNA. Translation: AAH60782.1.
CCDSiCCDS724.1.
RefSeqiNP_001127948.1. NM_001134476.1.
NP_056165.1. NM_015350.2.
XP_005270758.1. XM_005270701.4.
XP_005270759.1. XM_005270702.4.
XP_005270760.1. XM_005270703.4.
XP_011539445.1. XM_011541143.2.
XP_011539446.1. XM_011541144.2.
XP_011539447.1. XM_011541145.2.
XP_011539448.1. XM_011541146.2.
UniGeneiHs.482017.
Hs.741594.

Genome annotation databases

EnsembliENST00000330947; ENSP00000332674; ENSG00000197147.
ENST00000439853; ENSP00000400704; ENSG00000197147.
GeneIDi23507.
KEGGihsa:23507.
UCSCiuc057ieo.1. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF385436 mRNA. Translation: AAM43837.1.
D86984 mRNA. Translation: BAA13220.2. Different initiation.
AY358112 mRNA. Translation: AAQ88479.1.
CH471097 Genomic DNA. Translation: EAW73137.1.
CH471097 Genomic DNA. Translation: EAW73138.1.
BC030607 mRNA. Translation: AAH30607.1.
BC060782 mRNA. Translation: AAH60782.1.
CCDSiCCDS724.1.
RefSeqiNP_001127948.1. NM_001134476.1.
NP_056165.1. NM_015350.2.
XP_005270758.1. XM_005270701.4.
XP_005270759.1. XM_005270702.4.
XP_005270760.1. XM_005270703.4.
XP_011539445.1. XM_011541143.2.
XP_011539446.1. XM_011541144.2.
XP_011539447.1. XM_011541145.2.
XP_011539448.1. XM_011541146.2.
UniGeneiHs.482017.
Hs.741594.

3D structure databases

ProteinModelPortaliQ6P9F7.
SMRiQ6P9F7. Positions 379-803.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi117054. 21 interactions.
DIPiDIP-61361N.
IntActiQ6P9F7. 1 interaction.
STRINGi9606.ENSP00000332674.

Protein family/group databases

TCDBi1.A.25.3.1. the gap junction-forming innexin (innexin) family.

PTM databases

iPTMnetiQ6P9F7.
PhosphoSiteiQ6P9F7.

Polymorphism and mutation databases

BioMutaiLRRC8B.
DMDMi88911355.

Proteomic databases

EPDiQ6P9F7.
MaxQBiQ6P9F7.
PaxDbiQ6P9F7.
PeptideAtlasiQ6P9F7.
PRIDEiQ6P9F7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000330947; ENSP00000332674; ENSG00000197147.
ENST00000439853; ENSP00000400704; ENSG00000197147.
GeneIDi23507.
KEGGihsa:23507.
UCSCiuc057ieo.1. human.

Organism-specific databases

CTDi23507.
GeneCardsiLRRC8B.
HGNCiHGNC:30692. LRRC8B.
HPAiHPA017950.
MIMi612888. gene.
neXtProtiNX_Q6P9F7.
PharmGKBiPA142671535.
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129676.
HOGENOMiHOG000231806.
HOVERGENiHBG052360.
InParanoidiQ6P9F7.
OMAiNSQDKVE.
OrthoDBiEOG091G01ER.
PhylomeDBiQ6P9F7.
TreeFamiTF331443.

Miscellaneous databases

GenomeRNAii23507.
PROiQ6P9F7.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000197147.
CleanExiHS_LRRC8B.
ExpressionAtlasiQ6P9F7. baseline and differential.
GenevisibleiQ6P9F7. HS.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR026906. LRR_5.
IPR021040. LRRC8_Pannexin_like.
[Graphical view]
PfamiPF13306. LRR_5. 1 hit.
PF13855. LRR_8. 1 hit.
PF12534. Pannexin_like. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 8 hits.
[Graphical view]
PROSITEiPS51450. LRR. 9 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLRC8B_HUMAN
AccessioniPrimary (citable) accession number: Q6P9F7
Secondary accession number(s): D3DT28
, Q6UY21, Q8N106, Q92627
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 7, 2006
Last sequence update: February 7, 2006
Last modified: September 7, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.