Unreviewed, UniProtKB/TrEMBL Q6P7B6 (Q6P7B6_RAT)

Names and origin

Protein names

Submitted name:
    Ephrin B1 EMBL AAH61744.1

Gene names

Name:

Efnb1 EMBL AAH61744.1 RGD 2540

Organism

Rattus norvegicus (Rat) EMBL AAH61744.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	345 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the ephrin family. RuleBase RU004375V0

Ontologies

Gene Ontology (GO)
Biological process	axon guidance Traceable author statement. Source: RGD ephrin receptor signaling pathway Traceable author statement. Source: RGD
Molecular function	ephrin receptor binding Traceable author statement. Source: RGD
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
Mpp4	Q9QYH1	1	EBI-937609,EBI-937554

Sequences

	Sequence		Length	Mass (Da)
	Q6P7B6-1 [UniParc]. Last modified July 5, 2004. Version 1. Checksum: 783046C6C7358F7C	FASTA	345	37,893
	10 20 30 40 50 60 MARPGQRWLS KWLVAMVVLT LCRLATPLAK NLEPVSWSSL NPKFLSGKGL VIYPKIGDKL 70 80 90 100 110 120 DIICPRAEAG RPYEYYKLYL VRPEQAAACS TVLDPNVLVT CNKPQQEIRF TIKFQEFSPN 130 140 150 160 170 180 YMGLEFKKYH DYYITSTSNG SLEGLENREG GVCRTRTMKI VMKVGQDPNA VTPEQLTTSR 190 200 210 220 230 240 PSKESDNTVK TATQAPGRGS QGDSDGKHET VNQQEKSGPG AGGSGSGDTD SFFNSKVALF 250 260 270 280 290 300 AAVGAGCVIF LLIIIFLTVL LLKLRKRHRK HTQQRAAALS LSTLASPKGG SGTAGTEPSD 310 320 330 340 IIIPLRTTEN NYCPHYEKVS GDYGHPVYIV QEMPPQSPAN IYYKV

References

[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Prostate EMBL AAH61744.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	BC061744 mRNA. Translation: AAH61744.1.
RefSeq	NP_058785.2.
UniGene	Rn.44398
3D structure databases
HSSP	HSSP built from PDB template 1KGY based on UniProtKB P52800.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q6P7B6. 1 interaction.
Genome annotation databases
Ensembl	ENSRNOG00000006877. Rattus norvegicus. [Contig view]
GeneID	25186.
KEGG	rno:25186.
Organism-specific databases
RGD	2540. Efnb1.
Phylogenomic databases
HOVERGEN	Q6P7B6.
Gene expression databases
ArrayExpress	Q6P7B6.
Family and domain databases
InterPro	IPR008972. Cupredoxin. IPR001799. Ephrin. [Graphical view]
Gene3D	G3DSA:2.60.40.420. Cupredoxin. 1 hit.
PANTHER	PTHR11304. Ephrin. 1 hit.
Pfam	PF00812. Ephrin. 1 hit. [Graphical view]
PRINTS	PR01347. EPHRIN.
ProDom	PD002533. Ephrin. 1 hit. [Graphical view] [Entries sharing at least one domain]
PROSITE	PS01299. EPHRIN. 1 hit. [Graphical view]
Other Resources
NextBio	605681.

Entry information

Entry name

Q6P7B6_RAT

Accession

Primary (citable) accession number: Q6P7B6

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2004
Last sequence update:	July 5, 2004
Last modified:	December 16, 2008
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)