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Q6P7B4

- F198B_RAT

UniProt

Q6P7B4 - F198B_RAT

Protein

Protein FAM198B

Gene

Fam198b

Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein FAM198B
    Alternative name(s):
    Expressed in nerve and epithelium during development
    Gene namesi
    Name:Fam198b
    Synonyms:Ened
    OrganismiRattus norvegicus (Rat)
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 2

    Organism-specific databases

    RGDi735075. Fam198b.

    Subcellular locationi

    GO - Cellular componenti

    1. Golgi membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Golgi apparatus, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 516516Protein FAM198BPRO_0000288904Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi286 – 2861N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PRIDEiQ6P7B4.

    Expressioni

    Gene expression databases

    GenevestigatoriQ6P7B4.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000013525.

    Structurei

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini1 – 3737CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini56 – 516461ExtracellularSequence AnalysisAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei38 – 5518Helical; Signal-anchor for type II membrane proteinSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the FAM198 family.Curated

    Keywords - Domaini

    Signal-anchor, Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG44675.
    GeneTreeiENSGT00420000029769.
    HOGENOMiHOG000112372.
    InParanoidiQ6P7B4.
    OMAiCPVILWD.
    OrthoDBiEOG76DTS4.
    PhylomeDBiQ6P7B4.
    TreeFamiTF330994.

    Family and domain databases

    InterProiIPR029207. FAM198.
    [Graphical view]
    PfamiPF15051. FAM198. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6P7B4-1 [UniParc]FASTAAdd to Basket

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    MTCPDKLGQL INWFVCSLCA PRVCKLWSSR RPRTRRNLLL GTACAIYLGF    50
    LVSQVGKGSF QHGQATNRGP PNNQDIFKVP FPEIPLDGTL APPESQGNGS 100
    TLQPNVVYIT LRSKRSKPAN IRGTVKPKRR KKYAVASVAP DQEVLVRPSL 150
    IQPEVARAAD AEVPGYVQGY LTKVGERPWR MLHGPRVRGS NLQQPRAPES 200
    NIRIYSESAP SWLSKEDIRR MRLLADGEVA SILPTIFEGG TRLLMLEGST 250
    SGSVPGCGPS PCGLLKQPLD MSEVFAFHLD RILGLNRTLP SVSRKLEFIQ 300
    DGRPRPIILW DSSLVPSSNV SHSSVKITWG TYQQLLKQKC WLNGRVPRPE 350
    WGCTEVHHHE WSKMALFDFL LQIYNRLDTN CCGFRPRKED ACVQNGLRPN 400
    CEDQSSVTLA HIIQRKNDPR HLVFINNKGF FDRSEDNLNF KLLEGIREFP 450
    ESAVSVLKSQ HLRQKLLQSL FLDQVYWESQ GGRQGIEKLI DVIERRARIL 500
    ITYINAHGAR VLPMNE 516
    Length:516
    Mass (Da):58,206
    Last modified:July 5, 2004 - v1
    Checksum:iCBF1FCD4340CBA6C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC061747 mRNA. Translation: AAH61747.1.
    RefSeqiNP_954536.1. NM_199105.1.
    XP_006232576.1. XM_006232514.1.
    UniGeneiRn.20514.

    Genome annotation databases

    EnsembliENSRNOT00000013524; ENSRNOP00000013525; ENSRNOG00000010183.
    GeneIDi310540.
    KEGGirno:310540.
    UCSCiRGD:735075. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC061747 mRNA. Translation: AAH61747.1 .
    RefSeqi NP_954536.1. NM_199105.1.
    XP_006232576.1. XM_006232514.1.
    UniGenei Rn.20514.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000013525.

    Proteomic databases

    PRIDEi Q6P7B4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000013524 ; ENSRNOP00000013525 ; ENSRNOG00000010183 .
    GeneIDi 310540.
    KEGGi rno:310540.
    UCSCi RGD:735075. rat.

    Organism-specific databases

    CTDi 51313.
    RGDi 735075. Fam198b.

    Phylogenomic databases

    eggNOGi NOG44675.
    GeneTreei ENSGT00420000029769.
    HOGENOMi HOG000112372.
    InParanoidi Q6P7B4.
    OMAi CPVILWD.
    OrthoDBi EOG76DTS4.
    PhylomeDBi Q6P7B4.
    TreeFami TF330994.

    Miscellaneous databases

    NextBioi 662125.
    PROi Q6P7B4.

    Gene expression databases

    Genevestigatori Q6P7B4.

    Family and domain databases

    InterProi IPR029207. FAM198.
    [Graphical view ]
    Pfami PF15051. FAM198. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Prostate.

    Entry informationi

    Entry nameiF198B_RAT
    AccessioniPrimary (citable) accession number: Q6P7B4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 29, 2007
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 64 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3