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Q6P736

- Q6P736_RAT

UniProt

Q6P736 - Q6P736_RAT

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Protein
Submitted name: Polypyrimidine tract binding protein 1, isoform CRA_a
Gene
Ptbp1, rCG_29328
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. nucleotide binding Source: InterPro

GO - Biological processi

  1. mRNA processing Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Polypyrimidine tract binding protein 1, isoform CRA_aImported
Submitted name:
Ptbp1 proteinImported
Gene namesi
Name:Ptbp1Imported
ORF Names:rCG_29328Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi62047. Ptbp1.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: InterPro
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ6P736.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000231699.
HOVERGENiHBG069548.
InParanoidiQ6P736.
KOiK13218.
TreeFamiTF319824.

Family and domain databases

Gene3Di3.30.70.330. 4 hits.
InterProiIPR006536. HnRNP-L_PTB.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
SMARTiSM00360. RRM. 4 hits.
[Graphical view]
TIGRFAMsiTIGR01649. hnRNP-L_PTB. 1 hit.
PROSITEiPS50102. RRM. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6P736-1 [UniParc]FASTAAdd to Basket

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MDGIVPDIAV GTKRGSDELF STCVSNGPFI MSSSASAANG NDSKKFKGDN    50
RSTGVPSRVI HVRKLPSDVT EGEVISLGLP FGKVTNLLML KGKNQAFIEM 100
STEEAANTMV NYYTSVAPVL RGQPIYIQFS NHKELKTDSS PNQARAQAAL 150
QAVNSVQSGN LALAASAAAV DAGMAMAGQS PVLRIIVENL FYPVTLDVLH 200
QIFSKFGTVL KIITFTKNNQ FQALLQYADP VSAQHAKLSL DGQNIYNACC 250
TLRIDFSKLT SLNVKYNNDK SRDYTRPDLP SGDSQPSLDQ TMAAAFGAPG 300
IMSASPYAGA GFPPTFAIPQ AAGLSVPNVH GALAPLAIPS AAAAAAAAGR 350
IAIPGLAGAG NSVLLVSNLN PERVTPQSLF ILFGVYGDVQ RVKILFNKKE 400
NALVQMADGS QAQLAMSHLN GHKLHGKSVR ITLSKHQSVQ LPREGQEDQG 450
LTKDYGSSPL HRFKKPGSKN FQNIFPPSAT LHLSNIPPSV SEDDLKSLFS 500
SNGGVVKGFK FFQKDRKMAL IQMGSVEEAV QALIELHNHD LGENHHLRVS 550
FSKSTI 556
Length:556
Mass (Da):59,366
Last modified:July 5, 2004 - v1
Checksum:i08A7E5D5EF7F3811
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC061858 mRNA. Translation: AAH61858.1.
CH474029 Genomic DNA. Translation: EDL89384.1.
RefSeqiNP_001257986.1. NM_001271057.1.
NP_071961.2. NM_022516.5.
UniGeneiRn.64440.

Genome annotation databases

GeneIDi29497.
KEGGirno:29497.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC061858 mRNA. Translation: AAH61858.1 .
CH474029 Genomic DNA. Translation: EDL89384.1 .
RefSeqi NP_001257986.1. NM_001271057.1.
NP_071961.2. NM_022516.5.
UniGenei Rn.64440.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 29497.
KEGGi rno:29497.

Organism-specific databases

CTDi 5725.
RGDi 62047. Ptbp1.

Phylogenomic databases

HOGENOMi HOG000231699.
HOVERGENi HBG069548.
InParanoidi Q6P736.
KOi K13218.
TreeFami TF319824.

Gene expression databases

Genevestigatori Q6P736.

Family and domain databases

Gene3Di 3.30.70.330. 4 hits.
InterProi IPR006536. HnRNP-L_PTB.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view ]
SMARTi SM00360. RRM. 4 hits.
[Graphical view ]
TIGRFAMsi TIGR01649. hnRNP-L_PTB. 1 hit.
PROSITEi PS50102. RRM. 4 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: ProstateImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.

Entry informationi

Entry nameiQ6P736_RAT
AccessioniPrimary (citable) accession number: Q6P736
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: September 3, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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