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Q6P736

- Q6P736_RAT

UniProt

Q6P736 - Q6P736_RAT

Protein
Submitted name:

Polypyrimidine tract binding protein 1, isoform CRA_a

Gene

Ptbp1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 82 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. RNA binding Source: InterPro

    GO - Biological processi

    1. mRNA processing Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Polypyrimidine tract binding protein 1, isoform CRA_aImported
    Submitted name:
    Ptbp1 proteinImported
    Gene namesi
    Name:Ptbp1Imported
    ORF Names:rCG_29328Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi62047. Ptbp1.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: InterPro

    Expressioni

    Gene expression databases

    GenevestigatoriQ6P736.

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000231699.
    HOVERGENiHBG069548.
    InParanoidiQ6P736.
    KOiK13218.
    TreeFamiTF319824.

    Family and domain databases

    Gene3Di3.30.70.330. 4 hits.
    InterProiIPR006536. HnRNP-L_PTB.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    SMARTiSM00360. RRM. 4 hits.
    [Graphical view]
    TIGRFAMsiTIGR01649. hnRNP-L_PTB. 1 hit.
    PROSITEiPS50102. RRM. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6P736-1 [UniParc]FASTAAdd to Basket

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    MDGIVPDIAV GTKRGSDELF STCVSNGPFI MSSSASAANG NDSKKFKGDN    50
    RSTGVPSRVI HVRKLPSDVT EGEVISLGLP FGKVTNLLML KGKNQAFIEM 100
    STEEAANTMV NYYTSVAPVL RGQPIYIQFS NHKELKTDSS PNQARAQAAL 150
    QAVNSVQSGN LALAASAAAV DAGMAMAGQS PVLRIIVENL FYPVTLDVLH 200
    QIFSKFGTVL KIITFTKNNQ FQALLQYADP VSAQHAKLSL DGQNIYNACC 250
    TLRIDFSKLT SLNVKYNNDK SRDYTRPDLP SGDSQPSLDQ TMAAAFGAPG 300
    IMSASPYAGA GFPPTFAIPQ AAGLSVPNVH GALAPLAIPS AAAAAAAAGR 350
    IAIPGLAGAG NSVLLVSNLN PERVTPQSLF ILFGVYGDVQ RVKILFNKKE 400
    NALVQMADGS QAQLAMSHLN GHKLHGKSVR ITLSKHQSVQ LPREGQEDQG 450
    LTKDYGSSPL HRFKKPGSKN FQNIFPPSAT LHLSNIPPSV SEDDLKSLFS 500
    SNGGVVKGFK FFQKDRKMAL IQMGSVEEAV QALIELHNHD LGENHHLRVS 550
    FSKSTI 556
    Length:556
    Mass (Da):59,366
    Last modified:July 5, 2004 - v1
    Checksum:i08A7E5D5EF7F3811
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC061858 mRNA. Translation: AAH61858.1.
    CH474029 Genomic DNA. Translation: EDL89384.1.
    RefSeqiNP_001257986.1. NM_001271057.1.
    NP_071961.2. NM_022516.5.
    UniGeneiRn.64440.

    Genome annotation databases

    GeneIDi29497.
    KEGGirno:29497.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC061858 mRNA. Translation: AAH61858.1 .
    CH474029 Genomic DNA. Translation: EDL89384.1 .
    RefSeqi NP_001257986.1. NM_001271057.1.
    NP_071961.2. NM_022516.5.
    UniGenei Rn.64440.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 29497.
    KEGGi rno:29497.

    Organism-specific databases

    CTDi 5725.
    RGDi 62047. Ptbp1.

    Phylogenomic databases

    HOGENOMi HOG000231699.
    HOVERGENi HBG069548.
    InParanoidi Q6P736.
    KOi K13218.
    TreeFami TF319824.

    Gene expression databases

    Genevestigatori Q6P736.

    Family and domain databases

    Gene3Di 3.30.70.330. 4 hits.
    InterProi IPR006536. HnRNP-L_PTB.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    SMARTi SM00360. RRM. 4 hits.
    [Graphical view ]
    TIGRFAMsi TIGR01649. hnRNP-L_PTB. 1 hit.
    PROSITEi PS50102. RRM. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: ProstateImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.

    Entry informationi

    Entry nameiQ6P736_RAT
    AccessioniPrimary (citable) accession number: Q6P736
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2004
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 82 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)