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Protein
Submitted name:

Nop58 protein

Gene

nop58

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

ReactomeiR-DRE-4570464. SUMOylation of RNA binding proteins.

Names & Taxonomyi

Protein namesi
Submitted name:
Nop58 proteinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:nop58Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 6

Organism-specific databases

ZFINiZDB-GENE-040426-2140. nop58.

PTM / Processingi

Proteomic databases

PaxDbiQ6P6X6.
PRIDEiQ6P6X6.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000109194.

Structurei

3D structure databases

ProteinModelPortaliQ6P6X6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini283 – 401119NopInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains Nop domain.SAAS annotation

Phylogenomic databases

eggNOGiKOG2572. Eukaryota.
COG1498. LUCA.
GeneTreeiENSGT00550000074998.
HOVERGENiHBG007270.
KOiK14565.
OMAiIRNQMEG.

Family and domain databases

InterProiIPR012974. NOP5_N.
IPR002687. Nop_dom.
IPR012976. NOSIC.
[Graphical view]
PfamiPF01798. Nop. 1 hit.
PF08156. NOP5NT. 1 hit.
[Graphical view]
SMARTiSM00931. NOSIC. 1 hit.
[Graphical view]
SUPFAMiSSF89124. SSF89124. 1 hit.
PROSITEiPS51358. NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6P6X6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLVLFETAAG YAIFKVLDEQ KLQQVDSLWK EFETPEKANK VVKLKHFEKF
60 70 80 90 100
QDTTEALAAA TAMVEGKLGK SLKKVLKKVV AKEAHEQLAI TDAKLGGVIK
110 120 130 140 150
EKLNLSCVHS PAVAELMRGI RNQMEGLITG LPAREIAAMS LGLAHSLSRY
160 170 180 190 200
KLKFSPDKVD TMIVQAISLL DDLDKELNNY IMRCREWYGW HFPEIGKIIT
210 220 230 240 250
DNLAYCKTVR KIGDRTNVAT TELSEFLPEE IEAEVKLAAE ISMGTEVSEE
260 270 280 290 300
DIANIMHLCD QVIEISEYRT QLYDYLKNRM MAIAPNLTVM VGELVGARLI
310 320 330 340 350
SHAGSLLNLA KHPASTVQIL GAEKALFRAL KTRRDTPKYG LIYHASLVGQ
360 370 380 390 400
TTAKNKGKIS RMLAAKTALA IRYDALGEDT NAEMGVENRA KLEARLRFLE
410 420 430 440 450
EKGIRRISGS GKALAKADKY QHKSDVKVYD PSGDSTLPTV SKKRKIEEVE
460 470 480 490 500
EAEEEDQPIE AKAKKVKREA PAEGEAETET PKKKKKKKRA EEEPKQEEEE
510 520 530 540 550
TAVSLVEEVR EEPSKKKKKR AAEVELKEEP EETVVEETTE KKKKKKKKVK

EDE
Length:553
Mass (Da):62,074
Last modified:July 5, 2004 - v1
Checksum:i55B4E03C9B856A2C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX927225 Genomic DNA. No translation available.
BC061961 mRNA. Translation: AAH61961.1.
RefSeqiNP_001009889.2. NM_001009889.2.
UniGeneiDr.5454.

Genome annotation databases

EnsembliENSDART00000169915; ENSDARP00000131046; ENSDARG00000104353.
GeneIDi494152.
KEGGidre:494152.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX927225 Genomic DNA. No translation available.
BC061961 mRNA. Translation: AAH61961.1.
RefSeqiNP_001009889.2. NM_001009889.2.
UniGeneiDr.5454.

3D structure databases

ProteinModelPortaliQ6P6X6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000109194.

Proteomic databases

PaxDbiQ6P6X6.
PRIDEiQ6P6X6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000169915; ENSDARP00000131046; ENSDARG00000104353.
GeneIDi494152.
KEGGidre:494152.

Organism-specific databases

CTDi51602.
ZFINiZDB-GENE-040426-2140. nop58.

Phylogenomic databases

eggNOGiKOG2572. Eukaryota.
COG1498. LUCA.
GeneTreeiENSGT00550000074998.
HOVERGENiHBG007270.
KOiK14565.
OMAiIRNQMEG.

Enzyme and pathway databases

ReactomeiR-DRE-4570464. SUMOylation of RNA binding proteins.

Miscellaneous databases

NextBioi20785811.

Family and domain databases

InterProiIPR012974. NOP5_N.
IPR002687. Nop_dom.
IPR012976. NOSIC.
[Graphical view]
PfamiPF01798. Nop. 1 hit.
PF08156. NOP5NT. 1 hit.
[Graphical view]
SMARTiSM00931. NOSIC. 1 hit.
[Graphical view]
SUPFAMiSSF89124. SSF89124. 1 hit.
PROSITEiPS51358. NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: KidneyImported.
  2. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.
  3. Ensembl
    Submitted (NOV-2015) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ6P6X6_DANRE
AccessioniPrimary (citable) accession number: Q6P6X6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 11, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.