Q6P5H2 (NEST_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 70.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Nestin | ||
| Gene names |
| ||
| Organism | Mus musculus (Mouse) [Reference proteome] | ||
| Taxonomic identifier | 10090 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 1864 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Required for brain and eye development. Promotes the disassembly of phosphorylated vimentin intermediate filaments (IF) during mitosis and may play a role in the trafficking and distribution of IF proteins and other cellular factors to daughter cells during progenitor cell division By similarity. Required for survival, renewal and mitogen-stimulated proliferation of neural progenitor cells. Ref.8 |
| Subunit structure | Forms homodimers and homotetramers in vitro. In mixtures with other intermediate filament proteins such as vimentin and alpha-internexin, this protein preferentially forms heterodimers which can assemble to form intermediate filaments if nestin does not exceed 25%. Interacts with FHOD3 By similarity. |
| Post-translational modification | Constitutively phosphorylated. This increases during mitosis when the cytoplasmic intermediate filament network is reorganized By similarity. |
| Disruption phenotype | Embryonic lethality with the neuroepithelium of developing neural tube exhibiting low numbers of neural stem cells and high levels of apoptosis. No effect on cytoskeletal integrity. Ref.8 |
| Sequence similarities | Belongs to the intermediate filament family. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q6P5H2-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q6P5H2-2) The sequence of this isoform differs from the canonical sequence as follows: 750-793: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1864 | 1864 | Nestin | PRO_0000285856 | |||||
Regions | |||||||||
| Region | 1 – 7 | 7 | Head | ||||||
| Region | 8 – 314 | 307 | Rod | ||||||
| Region | 8 – 43 | 36 | Coil 1A | ||||||
| Region | 44 – 55 | 12 | Linker 1 | ||||||
| Region | 56 – 151 | 96 | Coil 1B | ||||||
| Region | 152 – 174 | 23 | Linker 12 | ||||||
| Region | 175 – 193 | 19 | Coil 2A | ||||||
| Region | 194 – 196 | 3 | Linker 2 | ||||||
| Region | 197 – 314 | 118 | Coil 2B | ||||||
| Region | 315 – 1864 | 1550 | Tail | ||||||
Amino acid modifications | |||||||||
| Modified residue | 312 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 316 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 356 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 359 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 389 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 565 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 575 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 688 | 1 | Phosphoserine Ref.7 | ||||||
| Modified residue | 841 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1106 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1177 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1188 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1195 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1216 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1541 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 1656 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1665 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1745 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1747 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1860 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1861 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 750 – 793 | 44 | Missing in isoform 2. | VSP_024923 | |||||
Experimental info | |||||||||
| Sequence conflict | 184 | 1 | G → C in AAF04456. Ref.1 | ||||||
| Sequence conflict | 257 | 1 | A → P in AAF04456. Ref.1 | ||||||
| Sequence conflict | 265 | 1 | V → L in AAF04456. Ref.1 | ||||||
| Sequence conflict | 319 | 1 | R → G in AAF04456. Ref.1 | ||||||
| Sequence conflict | 458 | 1 | T → S in AAF04456. Ref.1 | ||||||
| Sequence conflict | 535 | 1 | M → K in AAF04456. Ref.1 | ||||||
| Sequence conflict | 544 | 1 | E → K in AAF04456. Ref.1 | ||||||
| Sequence conflict | 558 | 1 | G → R in AAF04456. Ref.1 | ||||||
| Sequence conflict | 570 | 1 | S → L in AAF04456. Ref.1 | ||||||
| Sequence conflict | 587 | 1 | L → S in AAF04456. Ref.1 | ||||||
| Sequence conflict | 673 | 1 | M → I in AAF04456. Ref.1 | ||||||
| Sequence conflict | 704 | 1 | Q → L in AAF04456. Ref.1 | ||||||
| Sequence conflict | 734 | 1 | E → D in AAF04456. Ref.1 | ||||||
| Sequence conflict | 851 | 1 | L → P in AAF04456. Ref.1 | ||||||
| Sequence conflict | 855 | 1 | K → R in AAF04456. Ref.1 | ||||||
| Sequence conflict | 900 | 1 | E → D in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1008 – 1011 | 4 | RKSL → GKFF in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1021 | 1 | S → F in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1157 | 1 | C → S in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1241 | 1 | E → EV in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1382 | 1 | G → A in ABK96808. Ref.5 | ||||||
| Sequence conflict | 1404 | 1 | A → T in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1410 | 1 | G → S in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1577 | 1 | F → S in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1586 – 1591 | 6 | GWSPAA → DWGPAV in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1684 | 1 | T → A in AAF04456. Ref.1 | ||||||
| Sequence conflict | 1821 | 1 | G → D in AAF04456. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Nestin expression during mouse eye and lens development." Yang J., Bian W., Gao X., Chen L., Jing N. Mech. Dev. 94:287-291(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). Strain: BALB/c. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Strain: C57BL/6. Tissue: Brain. |
| [3] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-764 AND 1510-1864. Strain: C57BL/6J. Tissue: Tongue. |
| [4] | "Intermediate filaments in cardiac myogenesis: nestin in the developing mouse heart." Kachinsky A.M., Dominov J.A., Miller J.B. J. Histochem. Cytochem. 43:843-847(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 33-57. Tissue: Heart. |
| [5] | "Novel metastatic mouse tumor cells express multiple properties of macrophages." Huysentruyt L.C., Banerjee D., Seyfried T.N. Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1358-1514. Strain: VM. |
| [6] | "Phosphoproteomic analysis of the developing mouse brain." Ballif B.A., Villen J., Beausoleil S.A., Schwartz D., Gygi S.P. Mol. Cell. Proteomics 3:1093-1101(2004) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1541, MASS SPECTROMETRY. Tissue: Embryonic brain. |
| [7] | "Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry." Zanivan S., Gnad F., Wickstroem S.A., Geiger T., Macek B., Cox J., Faessler R., Mann M. J. Proteome Res. 7:5314-5326(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-688, MASS SPECTROMETRY. Tissue: Melanoma. |
| [8] | "Nestin is required for the proper self-renewal of neural stem cells." Park D., Xiang A.P., Mao F.F., Zhang L., Di C.G., Liu X.M., Shao Y., Ma B.F., Lee J.H., Ha K.S., Walton N., Lahn B.T. Stem Cells 28:2162-2171(2010) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, DISRUPTION PHENOTYPE. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF076623 mRNA. Translation: AAF04456.2. BC060693 mRNA. Translation: AAH60693.1. BC062893 mRNA. Translation: AAH62893.1. AK009706 mRNA. Translation: BAB26451.1. AK075690 mRNA. Translation: BAC35892.1. S78708 mRNA. Translation: AAP32014.1. EF101559 mRNA. Translation: ABK96808.1. |
| IPI | IPI00453692. IPI00845608. |
| RefSeq | NP_057910.3. NM_016701.3. |
| UniGene | Mm.331129. |
3D structure databases | |
| ProteinModelPortal | Q6P5H2. |
| SMR | Q6P5H2. Positions 6-154, 221-311. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q6P5H2. 4 interactions. |
PTM databases | |
| PhosphoSite | Q6P5H2. |
Proteomic databases | |
| PaxDb | Q6P5H2. |
| PRIDE | Q6P5H2. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000090973; ENSMUSP00000088493; ENSMUSG00000004891. ENSMUST00000160694; ENSMUSP00000125571; ENSMUSG00000004891. |
| GeneID | 18008. |
| KEGG | mmu:18008. |
| UCSC | uc008ptm.1. mouse. uc008ptn.1. mouse. |
Organism-specific databases | |
| CTD | 10763. |
| MGI | MGI:101784. Nes. |
Phylogenomic databases | |
| eggNOG | NOG12793. |
| GeneTree | ENSGT00560000076873. |
| HOGENOM | HOG000113766. |
| HOVERGEN | HBG006463. |
| InParanoid | Q6P5H2. |
| KO | K07609. |
| OMA | PGKENQE. |
| OrthoDB | EOG49GKHK. |
Gene expression databases | |
| Bgee | Q6P5H2. |
| CleanEx | MM_NES. |
| Genevestigator | Q6P5H2. |
Family and domain databases | |
| InterPro | IPR016044. F. IPR001664. IF. IPR018039. Intermediate_filament_CS. [Graphical view] |
| PANTHER | PTHR23239. PTHR23239. 1 hit. |
| Pfam | PF00038. Filament. 1 hit. [Graphical view] |
| PROSITE | PS00226. IF. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | NES. mouse. |
| NextBio | 293025. |
| SOURCE | Search... |
Entry information
| Entry name | NEST_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q6P5H2 Secondary accession number(s): A1E2I2 Q9R0C4 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
