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Protein
Submitted name:

Sox3 protein

Gene

Sox3

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi142 – 210HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Sox3 proteinImported
Gene namesi
Name:Sox3Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98365. Sox3.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

PTM / Processingi

Proteomic databases

PaxDbiQ6P564.

Expressioni

Gene expression databases

BgeeiENSMUSG00000045179.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000115237.

Structurei

3D structure databases

ProteinModelPortaliQ6P564.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini142 – 210HMG box DNA-bindingInterPro annotationAdd BLAST69

Phylogenomic databases

eggNOGiKOG0527. Eukaryota.
ENOG4111FVF. LUCA.
HOVERGENiHBG105663.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
IPR022097. SOX_fam.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
PF12336. SOXp. 1 hit.
SMARTiView protein in SMART
SM00398. HMG. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q6P564-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
PARENASGER SPRVPADFAR SPSASLPFPP ELPARRPLST TPTESPGLFT
60 70 80 90 100
VAAPAPGAPS PPATLAHLLP APAMYSLLET ELKNPVGPPT PAAGTGVPAA
110 120 130 140 150
PGAAGKSGAN PAGGANAGNG GSGGANGGGG GGGGGGSDQD RVKRPMNAFM
160 170 180 190 200
VWSRGQRRKM ALENPKMHNS EISKRLGADW KLLTDAEKRP FIDEAKRLRA
210 220 230 240 250
VHMKEYPDYK YRPRRKTKTL LKKDKYSLPG GLLPPGAAAA AAAAAAAAAA
260 270 280 290 300
SSPVGVGQRL DTYTHVNGWA NGAYSLVQEQ LGYAQPPSMS SPPPPPALPQ
310 320 330 340 350
MHRYDMAGLQ YSPMMPPGAQ SYMNAAAAAA AASGYGGMAP SAAAAAAAAY
360 370 380 390 400
GQQPATAAAA AAAAAAMSLG PMGSVVKSEP SSPPPAIASH SQRACLGDLR
410 420 430 440
DMISMYLPPG GDAADAASPL PGGRLHGVHQ HYQGAGTAVN GTVPLTHI
Length:448
Mass (Da):45,157
Last modified:July 5, 2004 - v1
Checksum:iBC567C0808CA64C9
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC063061 mRNA. Translation: AAH63061.1.
UniGeneiMm.35784.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC063061 mRNA. Translation: AAH63061.1.
UniGeneiMm.35784.

3D structure databases

ProteinModelPortaliQ6P564.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000115237.

Proteomic databases

PaxDbiQ6P564.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:98365. Sox3.

Phylogenomic databases

eggNOGiKOG0527. Eukaryota.
ENOG4111FVF. LUCA.
HOVERGENiHBG105663.

Miscellaneous databases

ChiTaRSiSox3. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000045179.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
IPR022097. SOX_fam.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
PF12336. SOXp. 1 hit.
SMARTiView protein in SMART
SM00398. HMG. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ6P564_MOUSE
AccessioniPrimary (citable) accession number: Q6P564
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: May 10, 2017
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.