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Protein

Solute carrier family 25 member 40

Gene

slc25a40

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTransport

Names & Taxonomyi

Protein namesi
Recommended name:
Solute carrier family 25 member 40
Gene namesi
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-1003942. slc25a40.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei20 – 40Helical; Name=1Sequence analysisAdd BLAST21
Transmembranei104 – 124Helical; Name=2Sequence analysisAdd BLAST21
Transmembranei143 – 163Helical; Name=3Sequence analysisAdd BLAST21
Transmembranei200 – 221Helical; Name=4Sequence analysisAdd BLAST22
Transmembranei236 – 256Helical; Name=5Sequence analysisAdd BLAST21
Transmembranei299 – 319Helical; Name=6Sequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002918141 – 341Solute carrier family 25 member 40Add BLAST341

Proteomic databases

PaxDbiQ6P316.

Expressioni

Gene expression databases

BgeeiENSXETG00000027655.
ExpressionAtlasiQ6P316. baseline.

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000063269.

Structurei

3D structure databases

ProteinModelPortaliQ6P316.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati14 – 132Solcar 1Add BLAST119
Repeati140 – 224Solcar 2Add BLAST85
Repeati234 – 328Solcar 3Add BLAST95

Sequence similaritiesi

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0761. Eukaryota.
ENOG410XQVP. LUCA.
GeneTreeiENSGT00790000123051.
HOGENOMiHOG000214473.
HOVERGENiHBG011439.
InParanoidiQ6P316.
KOiK15119.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
InterProiView protein in InterPro
IPR002067. Mit_carrier.
IPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
PfamiView protein in Pfam
PF00153. Mito_carr. 3 hits.
PRINTSiPR00926. MITOCARRIER.
SUPFAMiSSF103506. SSF103506. 2 hits.
PROSITEiView protein in PROSITE
PS50920. SOLCAR. 3 hits.

Sequencei

Sequence statusi: Complete.

Q6P316-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKNTEPVQE AINITPSQQM IASSMGALLT SFFVTPLDVV KIRLQAQSKP
60 70 80 90 100
FIKGKCFVYC NGLMDHLCLC TNGNGKAWYR APGHFRGTTD AFVQIIRNEG
110 120 130 140 150
IKSLWSGLPP TLVMAVPATV IYFTCYDQLR DILIRSMPER AEIASLVAGA
160 170 180 190 200
TARLWSATLI SPLELIRTKM QYRPLSYKEL RQCIQSSVAK DGWLALWKGW
210 220 230 240 250
GPTVLRDVPF SALYWHNYEL VKQSLCQRYN TLQPTFAISF TAGAVSGSIA
260 270 280 290 300
AIVTLPFDVV KTRRQVEVGE LEMFTYSQKR SSSTWKLMRA IVIENGFGGL
310 320 330 340
FAGLIPRLIK VAPACAIMIS TYEFGKSFFR KLNNERQLKS L
Length:341
Mass (Da):38,259
Last modified:July 5, 2004 - v1
Checksum:i85920139D4E78C35
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC064218 mRNA. Translation: AAH64218.1.
BC075453 mRNA. Translation: AAH75453.1.
RefSeqiNP_989316.1. NM_203985.1.
XP_012819921.1. XM_012964467.2.
XP_017950087.1. XM_018094598.1.
UniGeneiStr.1541.

Genome annotation databases

EnsembliENSXETT00000057574; ENSXETP00000057574; ENSXETG00000027655.
GeneIDi394941.
KEGGixtr:394941.

Similar proteinsi

Entry informationi

Entry nameiS2540_XENTR
AccessioniPrimary (citable) accession number: Q6P316
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: July 5, 2004
Last modified: March 15, 2017
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families