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Q6P2L6

- NSD3_MOUSE

UniProt

Q6P2L6 - NSD3_MOUSE

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Protein
Histone-lysine N-methyltransferase NSD3
Gene
Whsc1l1, Nsd3
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Histone methyltransferase. Preferentially methylates 'Lys-4' and 'Lys-27' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation, while 'Lys-27' is a mark for transcriptional repression By similarity.

Catalytic activityi

S-adenosyl-L-methionine + L-lysine-[histone] = S-adenosyl-L-homocysteine + N(6)-methyl-L-lysine-[histone].

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri701 – 74848PHD-type 1
Add
BLAST
Zinc fingeri749 – 80557PHD-type 2
Add
BLAST
Zinc fingeri862 – 95594PHD-type 3
Add
BLAST
Zinc fingeri1323 – 137048PHD-type 4; atypical
Add
BLAST

GO - Molecular functioni

  1. histone-lysine N-methyltransferase activity Source: UniProtKB-EC
  2. zinc ion binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulator, Methyltransferase, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

Metal-binding, S-adenosyl-L-methionine, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Histone-lysine N-methyltransferase NSD3 (EC:2.1.1.43)
Alternative name(s):
Nuclear SET domain-containing protein 3
Wolf-Hirschhorn syndrome candidate 1-like protein 1 homolog
Short name:
WHSC1-like protein 1
Gene namesi
Name:Whsc1l1
Synonyms:Nsd3
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 8

Organism-specific databases

MGIiMGI:2142581. Whsc1l1.

Subcellular locationi

Nucleus By similarity. Chromosome By similarity

GO - Cellular componenti

  1. chromosome Source: UniProtKB-SubCell
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Chromosome, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14391439Histone-lysine N-methyltransferase NSD3
PRO_0000259522Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei150 – 1501Phosphoserine By similarity
Modified residuei790 – 7901N6-acetyllysine1 Publication

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiQ6P2L6.
PRIDEiQ6P2L6.

PTM databases

PhosphoSiteiQ6P2L6.

Expressioni

Gene expression databases

ArrayExpressiQ6P2L6.
BgeeiQ6P2L6.
GenevestigatoriQ6P2L6.

Interactioni

Subunit structurei

Interacts with BRD4 By similarity.

Protein-protein interaction databases

BioGridi231497. 1 interaction.
IntActiQ6P2L6. 2 interactions.
MINTiMINT-4110979.

Structurei

3D structure databases

ProteinModelPortaliQ6P2L6.
SMRiQ6P2L6. Positions 262-332, 700-748, 750-834, 919-1288, 1321-1415.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini270 – 33364PWWP 1
Add
BLAST
Domaini960 – 102566PWWP 2
Add
BLAST
Domaini1096 – 114651AWS
Add
BLAST
Domaini1148 – 1265118SET
Add
BLAST
Domaini1272 – 128817Post-SET
Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili1036 – 106530 Reviewed prediction
Add
BLAST

Sequence similaritiesi

Contains 1 AWS domain.
Contains 1 post-SET domain.
Contains 2 PWWP domains.
Contains 1 SET domain.

Keywords - Domaini

Coiled coil, Repeat, Zinc-finger

Phylogenomic databases

eggNOGiCOG2940.
GeneTreeiENSGT00740000114921.
HOGENOMiHOG000230893.
HOVERGENiHBG079979.
InParanoidiQ6P2L6.
KOiK11425.
OrthoDBiEOG7Z69BG.

Family and domain databases

Gene3Di3.30.40.10. 3 hits.
InterProiIPR006560. AWS.
IPR003616. Post-SET_dom.
IPR000313. PWWP_dom.
IPR001214. SET_dom.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00855. PWWP. 2 hits.
PF00856. SET. 1 hit.
[Graphical view]
SMARTiSM00570. AWS. 1 hit.
SM00249. PHD. 5 hits.
SM00508. PostSET. 1 hit.
SM00293. PWWP. 2 hits.
SM00317. SET. 1 hit.
[Graphical view]
SUPFAMiSSF57903. SSF57903. 3 hits.
PROSITEiPS51215. AWS. 1 hit.
PS50868. POST_SET. 1 hit.
PS50812. PWWP. 2 hits.
PS50280. SET. 1 hit.
PS01359. ZF_PHD_1. 1 hit.
PS50016. ZF_PHD_2. 2 hits.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q6P2L6-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MDFSFSFMQG IMGNTIQQPP QLIDSANIRQ EDAFDNHSDI VEDGGPTPFE     50
ATLQQGFQYP PTTEDLPPLT NGYPPSISLY ETQTKYPPYN QYPNGSANGF 100
GAVRNFSPTD YYHSEIPNTR PHEILEKPSP PQPPPPPSVP QTVIPKKTGS 150
PEIKLKITKT IQNGRELFES SLCGDLLNEV QASEHTKSKH ESRKEKRKKS 200
NRHESSRSEE RRSHKIPKLE PEGQNRPNER VDTAPEKPRE EPVLKEAIPV 250
QPILSSVPTT ETSTGVKFQV GDLVWSKVGT YPWWPCMVSS DPQLEVHSKI 300
NTRGAREYHV QFFSNQPERA WVHEKRVREY KGHEQYEELL AEAAKQASNH 350
SEKQKIRKPR PQRERAQWDI GIAHAEKALK MTREERVEQY TFIYIDKQPE 400
EASSQAKKNV TSKTEVKKPR RPRSVLNSQP EQTNAGEVAS SQSSTDLRRQ 450
SQRRHTSLEE EEPPPVKIAW KTAAARKSLP ASITMHKGSL DLQKCNMSPV 500
VKIEQVFALQ NATGDGKFID QFVYSTKGIG NKTEISVRGQ DRLIISSPSQ 550
RSEKPAQSAS SPEATSGSAG PVEKKQQRRS IRTRSESEKS AEVVPKKKIK 600
KEQVETAPQA SLKTGLQKGA SEISDSCKPL KKRSRASTDV ETASCTYRDT 650
SDSDSRGLSD GQVGFGKQVD SPSATADADA SDAQSVDSSL SRRGVGTSKK 700
DTVCQVCEKA GDCLVACEGE CCRHFHVECL GLTAVPEGHF TCEECETGQH 750
PCFSCKVSGK DVKRCSVSVC GKFYHEACVR KFPTAIFESK GFRCPQHCCS 800
SCSMEKDIHK ASKGRMMRCL RCPVAYHVGD ACVAAGSVSV SSHILICSNH 850
SKRSSQSAAI NVGFCFVCAR GLIVQDHSDP MFSSYAYKSH YLLSESNRAE 900
LMKLPMIPSS SASKKRCEKG GRLLCCESCP ASFHPECLSI DMPEGCWNCN 950
DCKAGKKLHY KQIVWVKLGN YRQVLWWPAE ICSPRSVPLN IQGLKHDLGD 1000
FPVFFFGSHD YYWVHQGRVF PYVEGDKHFA EGQTSINKTF KKALEEAAKR 1050
FQELKAQRES KEALEMERTS RKPPPYKHIK ANKVIGKVQV QVADLSEIPR 1100
CNCKPGDENP CGLESQCLNR MSQYECHPQV CPAGDRCQNQ CFTKRLYPDA 1150
EVIKTERRGW GLRTKRSIKK GEFVNEYVGE LIDEEECRLR IKRAHENSVT 1200
NFYMLTVTKD RIIDAGPKGN YSRFMNHSCN PNCETQKWTV NGDVRVGLFA 1250
LCDIPAGMEL TFNYNLDCLG NGRTVCHCGA DNCSGFLGVR PKSACTSAVD 1300
EKTKNAKLKK RRKVKAEAKP IHEDYCFQCG DGGELVMCDK KDCPKAYHLL 1350
CLNLTQPPHG KWECPWHRCD ECGSVAVSFC EFCPHSFCKA HGKGALVPSA 1400
LEGRLCCSSH DPASPVSPEY WSKIRCKWES QDSGEEVKE 1439
Length:1,439
Mass (Da):161,002
Last modified:October 31, 2006 - v2
Checksum:i917C7ADCD1248525
GO
Isoform 2 (identifier: Q6P2L6-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     135-135: P → PLPPPPPPPPP
     620-645: ASEISDSCKPLKKRSRASTDVETASC → SADRGAQGSVRFSDSSVSAAKEETVD
     646-1439: Missing.

Show »
Length:655
Mass (Da):73,380
Checksum:i358CBD840A5A47C6
GO
Isoform 3 (identifier: Q6P2L6-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-941: Missing.
     973-975: Missing.
     1199-1209: Missing.

Note: No experimental confirmation available.

Show »
Length:484
Mass (Da):54,977
Checksum:i562572C7B3100FD4
GO
Isoform 4 (identifier: Q6P2L6-4) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     135-135: P → PLPPPPPPPPP
     603-611: QVETAPQAS → QVGFLHVES
     612-1439: Missing.

Note: No experimental confirmation available.

Show »
Length:621
Mass (Da):70,000
Checksum:i5553A83F48BF9B16
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 941941Missing in isoform 3.
VSP_021431Add
BLAST
Alternative sequencei135 – 1351P → PLPPPPPPPPP in isoform 2 and isoform 4.
VSP_021432
Alternative sequencei603 – 6119QVETAPQAS → QVGFLHVES in isoform 4.
VSP_021433
Alternative sequencei612 – 1439828Missing in isoform 4.
VSP_021434Add
BLAST
Alternative sequencei620 – 64526ASEIS…ETASC → SADRGAQGSVRFSDSSVSAA KEETVD in isoform 2.
VSP_021435Add
BLAST
Alternative sequencei646 – 1439794Missing in isoform 2.
VSP_021436Add
BLAST
Alternative sequencei973 – 9753Missing in isoform 3.
VSP_021437
Alternative sequencei1199 – 120911Missing in isoform 3.
VSP_021438Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti122 – 1221H → R in BAE33834. 1 Publication
Sequence conflicti950 – 9501N → K in BAE21322. 1 Publication
Sequence conflicti1149 – 11491D → N in BAE21322. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK079952 mRNA. Translation: BAC37792.1.
AK132725 mRNA. Translation: BAE21322.1.
AK156746 mRNA. Translation: BAE33834.1.
AK170040 mRNA. Translation: BAE41526.1.
AC156990 Genomic DNA. No translation available.
AC162367 Genomic DNA. No translation available.
BC064447 mRNA. Translation: AAH64447.1.
CCDSiCCDS40305.1. [Q6P2L6-2]
RefSeqiNP_001001735.1. NM_001001735.1. [Q6P2L6-2]
XP_006509168.1. XM_006509105.1. [Q6P2L6-2]
UniGeneiMm.217337.

Genome annotation databases

EnsembliENSMUST00000146919; ENSMUSP00000115470; ENSMUSG00000054823. [Q6P2L6-2]
ENSMUST00000155861; ENSMUSP00000117596; ENSMUSG00000054823. [Q6P2L6-2]
GeneIDi234135.
KEGGimmu:234135.
UCSCiuc009lgk.1. mouse. [Q6P2L6-4]
uc009lgm.1. mouse. [Q6P2L6-2]
uc009lgp.1. mouse. [Q6P2L6-3]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK079952 mRNA. Translation: BAC37792.1 .
AK132725 mRNA. Translation: BAE21322.1 .
AK156746 mRNA. Translation: BAE33834.1 .
AK170040 mRNA. Translation: BAE41526.1 .
AC156990 Genomic DNA. No translation available.
AC162367 Genomic DNA. No translation available.
BC064447 mRNA. Translation: AAH64447.1 .
CCDSi CCDS40305.1. [Q6P2L6-2 ]
RefSeqi NP_001001735.1. NM_001001735.1. [Q6P2L6-2 ]
XP_006509168.1. XM_006509105.1. [Q6P2L6-2 ]
UniGenei Mm.217337.

3D structure databases

ProteinModelPortali Q6P2L6.
SMRi Q6P2L6. Positions 262-332, 700-748, 750-834, 919-1288, 1321-1415.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 231497. 1 interaction.
IntActi Q6P2L6. 2 interactions.
MINTi MINT-4110979.

PTM databases

PhosphoSitei Q6P2L6.

Proteomic databases

PaxDbi Q6P2L6.
PRIDEi Q6P2L6.

Protocols and materials databases

DNASUi 234135.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000146919 ; ENSMUSP00000115470 ; ENSMUSG00000054823 . [Q6P2L6-2 ]
ENSMUST00000155861 ; ENSMUSP00000117596 ; ENSMUSG00000054823 . [Q6P2L6-2 ]
GeneIDi 234135.
KEGGi mmu:234135.
UCSCi uc009lgk.1. mouse. [Q6P2L6-4 ]
uc009lgm.1. mouse. [Q6P2L6-2 ]
uc009lgp.1. mouse. [Q6P2L6-3 ]

Organism-specific databases

CTDi 54904.
MGIi MGI:2142581. Whsc1l1.

Phylogenomic databases

eggNOGi COG2940.
GeneTreei ENSGT00740000114921.
HOGENOMi HOG000230893.
HOVERGENi HBG079979.
InParanoidi Q6P2L6.
KOi K11425.
OrthoDBi EOG7Z69BG.

Miscellaneous databases

ChiTaRSi WHSC1L1. mouse.
NextBioi 382034.
PROi Q6P2L6.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q6P2L6.
Bgeei Q6P2L6.
Genevestigatori Q6P2L6.

Family and domain databases

Gene3Di 3.30.40.10. 3 hits.
InterProi IPR006560. AWS.
IPR003616. Post-SET_dom.
IPR000313. PWWP_dom.
IPR001214. SET_dom.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view ]
Pfami PF00855. PWWP. 2 hits.
PF00856. SET. 1 hit.
[Graphical view ]
SMARTi SM00570. AWS. 1 hit.
SM00249. PHD. 5 hits.
SM00508. PostSET. 1 hit.
SM00293. PWWP. 2 hits.
SM00317. SET. 1 hit.
[Graphical view ]
SUPFAMi SSF57903. SSF57903. 3 hits.
PROSITEi PS51215. AWS. 1 hit.
PS50868. POST_SET. 1 hit.
PS50812. PWWP. 2 hits.
PS50280. SET. 1 hit.
PS01359. ZF_PHD_1. 1 hit.
PS50016. ZF_PHD_2. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2; 3 AND 4).
    Strain: C57BL/6J and NOD.
    Tissue: Aorta, Spleen, Testis and Vein.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: C57BL/6.
    Tissue: Brain.
  4. Lubec G., Sunyer B., Chen W.-Q.
    Submitted (JAN-2009) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 899-914, IDENTIFICATION BY MASS SPECTROMETRY.
    Strain: OF1.
    Tissue: Hippocampus.
  5. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.
  6. "The phagosomal proteome in interferon-gamma-activated macrophages."
    Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P.
    Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  7. "SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
    Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
    Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-790, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Embryonic fibroblast.

Entry informationi

Entry nameiNSD3_MOUSE
AccessioniPrimary (citable) accession number: Q6P2L6
Secondary accession number(s): Q3TDS4
, Q3U0L8, Q3V131, Q8BJT3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: October 31, 2006
Last modified: July 9, 2014
This is version 97 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi