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Protein

Protein FAM117B

Gene

FAM117B

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM117B
Alternative name(s):
Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 13 protein
Gene namesi
Name:FAM117B
Synonyms:ALS2CR13
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 2

Organism-specific databases

HGNCiHGNC:14440. FAM117B.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA164719514.

Polymorphism and mutation databases

BioMutaiFAM117B.
DMDMi158563965.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 589589Protein FAM117BPRO_0000299533Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei10 – 101PhosphoserineCombined sources
Modified residuei106 – 1061PhosphoserineBy similarity
Modified residuei210 – 2101PhosphoserineCombined sources
Modified residuei219 – 2191PhosphoserineCombined sources
Modified residuei220 – 2201PhosphoserineCombined sources
Modified residuei273 – 2731PhosphoserineCombined sources
Modified residuei345 – 3451PhosphoserineBy similarity
Modified residuei391 – 3911PhosphoserineCombined sources
Modified residuei449 – 4491PhosphoserineBy similarity
Modified residuei457 – 4571PhosphoserineCombined sources

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ6P1L5.
MaxQBiQ6P1L5.
PaxDbiQ6P1L5.
PeptideAtlasiQ6P1L5.
PRIDEiQ6P1L5.

PTM databases

iPTMnetiQ6P1L5.
PhosphoSiteiQ6P1L5.

Expressioni

Gene expression databases

BgeeiQ6P1L5.
CleanExiHS_FAM117B.
GenevisibleiQ6P1L5. HS.

Organism-specific databases

HPAiHPA003229.
HPA028746.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
BANPQ8N9N53EBI-3893327,EBI-744695
KEAP1Q141453EBI-3893327,EBI-751001

Protein-protein interaction databases

BioGridi127329. 21 interactions.
IntActiQ6P1L5. 8 interactions.
MINTiMINT-3976457.
STRINGi9606.ENSP00000376071.

Structurei

3D structure databases

ProteinModelPortaliQ6P1L5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi15 – 9985Gly-richAdd
BLAST
Compositional biasi137 – 1459Poly-Pro

Phylogenomic databases

eggNOGiENOG410IEAU. Eukaryota.
ENOG4111PY2. LUCA.
GeneTreeiENSGT00390000005655.
HOGENOMiHOG000252927.
HOVERGENiHBG107860.
InParanoidiQ6P1L5.
OMAiAGHWPRD.
OrthoDBiEOG74XS6S.
PhylomeDBiQ6P1L5.
TreeFamiTF333159.

Family and domain databases

InterProiIPR026641. FAM117B.
IPR026642. Glcci1/FAM117.
[Graphical view]
PANTHERiPTHR14972. PTHR14972. 2 hits.
PTHR14972:SF6. PTHR14972:SF6. 2 hits.
PfamiPF15388. FAM117. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q6P1L5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSQRVRRNGS PTPAGSLGGG AVATAGGPGS RLQPMRATVP FQLKQQQQQQ
60 70 80 90 100
HGSPTRSGGG GGGNNNGGCC GGASGPAGGG GGGGPRTASR STSPTRGGGN
110 120 130 140 150
AAARTSPTVA TQTGASATST RGTSPTRSAA PGARGSPPRP PPPPPLLGTV
160 170 180 190 200
SSPSSSPTHL WTGEVSAAPP PARVRHRRRS PEQSRSSPEK RSPSAPVCKA
210 220 230 240 250
GDKTRQPSSS PSSIIRRTSS LDTLAAPYLA GHWPRDSHGQ AAPCMRDKAT
260 270 280 290 300
QTESAWAEEY SEKKKGSHKR SASWGSTDQL KEIAKLRQQL QRSKHSSRHH
310 320 330 340 350
RDKERQSPFH GNHAAINQCQ APVPKSALIP VIPITKSTGS RFRNSVEGLN
360 370 380 390 400
QEIEIIIKET GEKEEQLIPQ DIPDGHRAPP PLVQRSSSTR SIDTQTPGGA
410 420 430 440 450
DRGSNNSSRS QSVSPTSFLT ISNEGSEESP CSADDLLVDP RDKENGNNSP
460 470 480 490 500
LPKYATSPKP NNSYMFKREP PEGCERVKVF EECSPKQLHE IPAFYCPDKN
510 520 530 540 550
KVNFIPKSGS AFCLVSILKP LLPTPDLTLK GSGHSLTVTT GMTTTLLQPI
560 570 580
AVASLSTNTE QDRVSRGTST VMPSASLLPP PEPIEEAEG
Length:589
Mass (Da):61,968
Last modified:September 11, 2007 - v2
Checksum:i61B47F16D3E06B14
GO
Isoform 2 (identifier: Q6P1L5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     283-289: IAKLRQQ → VRKMVLR
     290-589: Missing.

Note: No experimental confirmation available.
Show »
Length:289
Mass (Da):29,428
Checksum:i1B2F767E5BECCC1D
GO

Sequence cautioni

The sequence AAI06907.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence AAI06908.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence AAX76518.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BAB69023.1 differs from that shown.Contaminating sequence. Sequence of unknown origin in the N-terminal part.Curated
The sequence BAB69023.1 differs from that shown. Reason: Frameshift at position 150. Curated
The sequence BAC04700.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti168 – 1681A → V in BAB69023 (PubMed:14702039).Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei283 – 2897IAKLRQQ → VRKMVLR in isoform 2. 1 PublicationVSP_027729
Alternative sequencei290 – 589300Missing in isoform 2. 1 PublicationVSP_027730Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009960 Genomic DNA. Translation: AAX76518.1. Sequence problems.
AC098831 Genomic DNA. Translation: AAY24090.1.
AB053315 mRNA. Translation: BAB69023.1. Sequence problems.
AK096090 mRNA. Translation: BAC04700.1. Different initiation.
BC065010 mRNA. Translation: AAH65010.1.
BC106906 mRNA. Translation: AAI06907.1. Different initiation.
BC106907 mRNA. Translation: AAI06908.1. Different initiation.
CCDSiCCDS33362.2. [Q6P1L5-1]
RefSeqiNP_775782.2. NM_173511.3. [Q6P1L5-1]
UniGeneiHs.471130.

Genome annotation databases

EnsembliENST00000392238; ENSP00000376071; ENSG00000138439. [Q6P1L5-1]
GeneIDi150864.
KEGGihsa:150864.
UCSCiuc010zhx.3. human. [Q6P1L5-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009960 Genomic DNA. Translation: AAX76518.1. Sequence problems.
AC098831 Genomic DNA. Translation: AAY24090.1.
AB053315 mRNA. Translation: BAB69023.1. Sequence problems.
AK096090 mRNA. Translation: BAC04700.1. Different initiation.
BC065010 mRNA. Translation: AAH65010.1.
BC106906 mRNA. Translation: AAI06907.1. Different initiation.
BC106907 mRNA. Translation: AAI06908.1. Different initiation.
CCDSiCCDS33362.2. [Q6P1L5-1]
RefSeqiNP_775782.2. NM_173511.3. [Q6P1L5-1]
UniGeneiHs.471130.

3D structure databases

ProteinModelPortaliQ6P1L5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi127329. 21 interactions.
IntActiQ6P1L5. 8 interactions.
MINTiMINT-3976457.
STRINGi9606.ENSP00000376071.

PTM databases

iPTMnetiQ6P1L5.
PhosphoSiteiQ6P1L5.

Polymorphism and mutation databases

BioMutaiFAM117B.
DMDMi158563965.

Proteomic databases

EPDiQ6P1L5.
MaxQBiQ6P1L5.
PaxDbiQ6P1L5.
PeptideAtlasiQ6P1L5.
PRIDEiQ6P1L5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000392238; ENSP00000376071; ENSG00000138439. [Q6P1L5-1]
GeneIDi150864.
KEGGihsa:150864.
UCSCiuc010zhx.3. human. [Q6P1L5-1]

Organism-specific databases

CTDi150864.
GeneCardsiFAM117B.
H-InvDBHIX0002751.
HGNCiHGNC:14440. FAM117B.
HPAiHPA003229.
HPA028746.
neXtProtiNX_Q6P1L5.
PharmGKBiPA164719514.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IEAU. Eukaryota.
ENOG4111PY2. LUCA.
GeneTreeiENSGT00390000005655.
HOGENOMiHOG000252927.
HOVERGENiHBG107860.
InParanoidiQ6P1L5.
OMAiAGHWPRD.
OrthoDBiEOG74XS6S.
PhylomeDBiQ6P1L5.
TreeFamiTF333159.

Miscellaneous databases

ChiTaRSiFAM117B. human.
GenomeRNAii150864.
PROiQ6P1L5.

Gene expression databases

BgeeiQ6P1L5.
CleanExiHS_FAM117B.
GenevisibleiQ6P1L5. HS.

Family and domain databases

InterProiIPR026641. FAM117B.
IPR026642. Glcci1/FAM117.
[Graphical view]
PANTHERiPTHR14972. PTHR14972. 2 hits.
PTHR14972:SF6. PTHR14972:SF6. 2 hits.
PfamiPF15388. FAM117. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
    Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
    , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
    Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 103-589 (ISOFORM 2).
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 142-589 (ISOFORM 1).
    Tissue: Kidney.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 196-589 (ISOFORM 1).
    Tissue: Skin.
  5. "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis."
    Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III
    J. Proteome Res. 7:1346-1351(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  6. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-219, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  7. "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
    Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
    Anal. Chem. 81:4493-4501(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  8. "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
    Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
    Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-391, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Leukemic T-cell.
  9. "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis."
    Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.
    Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  10. "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
    Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
    Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  11. "Toward a comprehensive characterization of a human cancer cell phosphoproteome."
    Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., Mohammed S.
    J. Proteome Res. 12:260-271(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-10; SER-210; SER-220; SER-273 AND SER-457, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma and Erythroleukemia.
  12. "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome."
    Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., Ye M., Zou H.
    J. Proteomics 96:253-262(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.

Entry informationi

Entry nameiF117B_HUMAN
AccessioniPrimary (citable) accession number: Q6P1L5
Secondary accession number(s): Q53QZ5
, Q585T9, Q8N8W1, Q96Q34
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: September 11, 2007
Last modified: July 6, 2016
This is version 90 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Miscellaneous

ALS2CR13 is mapped in the genomic region covering the complete candidate region for Amyotrophic lateral sclerosis 2 (ALS2).

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.