Q6P158 (DHX57_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 93.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Putative ATP-dependent RNA helicase DHX57 EC=3.6.4.13 Alternative name(s): DEAH box protein 57 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1386 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Probable ATP-binding RNA helicase. |
| Catalytic activity | ATP + H2O = ADP + phosphate. |
| Sequence similarities | Belongs to the DEAD box helicase family. DEAH subfamily. Contains 1 C3H1-type zinc finger. Contains 1 helicase ATP-binding domain. Contains 1 helicase C-terminal domain. Contains 1 UBA domain. |
| Sequence caution | The sequence AAM73547.1 differs from that shown. Reason: Erroneous initiation. The sequence AAY24256.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Coiled coil Zinc-finger |
| Ligand | ATP-binding Metal-binding Nucleotide-binding Zinc |
| Molecular function | Helicase Hydrolase |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Molecular_function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATP-dependent helicase activityInferred from electronic annotation. Source: InterPro nucleic acid bindingInferred from electronic annotation. Source: InterPro zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q6P158-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q6P158-2) The sequence of this isoform differs from the canonical sequence as follows: 636-658: SSATRLLYCTTGVLLRRLEGDTA → VCMLCLFPGNRNLWFLGIKSFGG 659-1386: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q6P158-3) The sequence of this isoform differs from the canonical sequence as follows: 1-102: Missing. 530-535: ASRQFQ → VLNSHM 536-1386: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1386 | 1386 | Putative ATP-dependent RNA helicase DHX57 | PRO_0000233151 | |||||
Regions | |||||||||
| Domain | 180 – 220 | 41 | UBA | ||||||
| Domain | 554 – 721 | 168 | Helicase ATP-binding | ||||||
| Domain | 830 – 1010 | 181 | Helicase C-terminal | ||||||
| Zinc finger | 299 – 326 | 28 | C3H1-type | ||||||
| Nucleotide binding | 567 – 574 | 8 | ATP By similarity | ||||||
| Coiled coil | 101 – 125 | 25 | Potential | ||||||
| Motif | 668 – 671 | 4 | DEVH box | ||||||
| Compositional bias | 9 – 49 | 41 | Gly-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 127 | 1 | Phosphoserine Ref.5 Ref.7 Ref.9 | ||||||
| Modified residue | 475 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 477 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 480 | 1 | Phosphoserine Ref.5 Ref.6 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 102 | 102 | Missing in isoform 3. | VSP_018056 | |||||
| Alternative sequence | 530 – 535 | 6 | ASRQFQ → VLNSHM in isoform 3. | VSP_018057 | |||||
| Alternative sequence | 536 – 1386 | 851 | Missing in isoform 3. | VSP_018058 | |||||
| Alternative sequence | 636 – 658 | 23 | SSATR…EGDTA → VCMLCLFPGNRNLWFLGIKS FGG in isoform 2. | VSP_018059 | |||||
| Alternative sequence | 659 – 1386 | 728 | Missing in isoform 2. | VSP_018060 | |||||
| Natural variant | 410 | 1 | S → F. Corresponds to variant rs11893062 [ dbSNP | Ensembl ]. | VAR_052190 | |||||
| Natural variant | 433 | 1 | S → G. Corresponds to variant rs35371077 [ dbSNP | Ensembl ]. | VAR_033861 | |||||
| Natural variant | 587 | 1 | N → S. Ref.3 Ref.4 Corresponds to variant rs7598922 [ dbSNP | Ensembl ]. | VAR_052191 | |||||
Experimental info | |||||||||
| Sequence conflict | 474 | 1 | A → T in BAB71479. Ref.1 | ||||||
| Sequence conflict | 976 | 1 | L → V in AAM73547. Ref.4 | ||||||
Sequences
| ||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Testis. |
| [2] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), VARIANT SER-587. Tissue: Skin. |
| [4] | "Molecular cloning of a new member of DEAH-box RNA/DNA helicase gene family." Lin S., Ying K., Wang Z., Xie Y., Mao Y. Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 405-1386 (ISOFORM 1), VARIANT SER-587. Tissue: Brain. |
| [5] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-127 AND SER-480, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [6] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-475; SER-477 AND SER-480, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-127, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [9] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-127, MASS SPECTROMETRY. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK057423 mRNA. Translation: BAB71479.1. AC018693 Genomic DNA. Translation: AAY24256.1. Sequence problems. BC053623 mRNA. Translation: AAH53623.1. BC060778 mRNA. Translation: AAH60778.2. BC065278 mRNA. Translation: AAH65278.1. BC131534 mRNA. Translation: AAI31535.1. AF283512 mRNA. Translation: AAM73547.1. Different initiation. |
| IPI | IPI00168885. IPI00399364. IPI00749029. |
| RefSeq | NP_945314.1. NM_198963.1. |
| UniGene | Hs.468226. |
3D structure databases | |
| ProteinModelPortal | Q6P158. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q6P158. 1 interaction. |
| STRING | 9606.ENSP00000295373. |
PTM databases | |
| PhosphoSite | Q6P158. |
Polymorphism databases | |
| DMDM | 94710252. |
Proteomic databases | |
| PaxDb | Q6P158. |
| PeptideAtlas | Q6P158. |
| PRIDE | Q6P158. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000295373; ENSP00000295373; ENSG00000163214. |
| GeneID | 90957. |
| KEGG | hsa:90957. |
| UCSC | uc002rre.3. human. uc002rrg.3. human. |
Organism-specific databases | |
| CTD | 90957. |
| GeneCards | GC02M039025. |
| HGNC | HGNC:20086. DHX57. |
| HPA | HPA036160. |
| neXtProt | NX_Q6P158. |
| PharmGKB | PA134919698. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG1643. |
| HOVERGEN | HBG080658. |
| InParanoid | Q6P158. |
| KO | K13026. |
| OMA | RAYKGWQ. |
| OrthoDB | EOG4ZS929. |
| PhylomeDB | Q6P158. |
Gene expression databases | |
| ArrayExpress | Q6P158. |
| Bgee | Q6P158. |
| CleanEx | HS_DHX57. |
| Genevestigator | Q6P158. |
| GermOnline | ENSG00000163214. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR011545. DNA/RNA_helicase_DEAD/DEAH_N. IPR002464. DNA/RNA_helicase_DEAH_CS. IPR011709. DUF1605. IPR007502. Helicase-assoc_dom. IPR014001. Helicase_ATP-bd. IPR001650. Helicase_C. IPR006575. RWD-domain. IPR009060. UBA-like. IPR015940. UBA/transl_elong_EF1B_N_euk. IPR000571. Znf_CCCH. [Graphical view] |
| Pfam | PF00270. DEAD. 1 hit. PF04408. HA2. 1 hit. PF00271. Helicase_C. 1 hit. PF07717. OB_NTP_bind. 1 hit. PF05773. RWD. 1 hit. PF00642. zf-CCCH. 1 hit. [Graphical view] |
| SMART | SM00487. DEXDc. 1 hit. SM00847. HA2. 1 hit. SM00490. HELICc. 1 hit. SM00356. ZnF_C3H1. 1 hit. [Graphical view] |
| SUPFAM | SSF46934. UBA_like. 1 hit. |
| PROSITE | PS00690. DEAH_ATP_HELICASE. 1 hit. PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. PS50030. UBA. 1 hit. PS50103. ZF_C3H1. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | DHX57. human. |
| GenomeRNAi | 90957. |
| NextBio | 77048. |
Entry information
| Entry name | DHX57_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q6P158 Secondary accession number(s): A2RRC7 Q96M33 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with
