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Protein

ADP-ribosylation factor-like protein 8B-A

Gene

arl8ba

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in lysosome motility. May play a role in chromosome segregation.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi29 – 35GTPBy similarity7
Nucleotide bindingi71 – 75GTPBy similarity5
Nucleotide bindingi130 – 133GTPBy similarity4

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Cell cycle, Cell division, Chromosome partition, Mitosis

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ADP-ribosylation factor-like protein 8B-A
Gene namesi
Name:arl8ba
Synonyms:arl8b
ORF Names:zgc:77187
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 6

Organism-specific databases

ZFINiZDB-GENE-030131-9370. arl8ba.

Subcellular locationi

  • Late endosome membrane By similarity
  • Lysosome membrane By similarity
  • Cytoplasmcytoskeletonspindle By similarity

  • Note: Localizes with microtubules at the spindle mid-zone during mitosis.By similarity

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Intramembranei1 – 19Note=Mediates targeting to membranesBy similarityAdd BLAST19

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton, Endosome, Lysosome, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002329261 – 186ADP-ribosylation factor-like protein 8B-AAdd BLAST186

Proteomic databases

PaxDbiQ6NZW8.
PRIDEiQ6NZW8.

Expressioni

Gene expression databases

BgeeiENSDARG00000006915.
ExpressionAtlasiQ6NZW8. differential.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000019311.

Structurei

3D structure databases

ProteinModelPortaliQ6NZW8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the small GTPase superfamily. Arf family.Curated

Phylogenomic databases

eggNOGiKOG0075. Eukaryota.
ENOG410XNUK. LUCA.
GeneTreeiENSGT00830000128269.
HOGENOMiHOG000163692.
HOVERGENiHBG105214.
InParanoidiQ6NZW8.
KOiK07955.
OMAiFFQSGQF.
OrthoDBiEOG091G0USZ.
PhylomeDBiQ6NZW8.
TreeFamiTF105470.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR024156. Small_GTPase_ARF.
IPR006689. Small_GTPase_ARF/SAR.
[Graphical view]
PfamiPF00025. Arf. 1 hit.
[Graphical view]
PRINTSiPR00328. SAR1GTPBP.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51417. ARF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6NZW8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLALINRLLD WFKSLFWKEE MELTLVGLQY SGKTTFVNVI ASGQFSEDMI
60 70 80 90 100
PTVGFNMRKV TKGNVTIKIW DIGGQPRFRS MWERYCRGVN AIVYMVDAAD
110 120 130 140 150
REKVEASRNE LHNLLDKPQL QGIPVLVLGN KRDLPNALDE KQLIEKMNLA
160 170 180
AIQDREICCY SISCKEKDNI DITLQWLIQH SKSRRS
Length:186
Mass (Da):21,494
Last modified:July 5, 2004 - v1
Checksum:i64127071D299D167
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC065942 mRNA. Translation: AAH65942.1.
RefSeqiNP_991129.1. NM_205566.1.
UniGeneiDr.78116.

Genome annotation databases

EnsembliENSDART00000014552; ENSDARP00000019311; ENSDARG00000006915.
GeneIDi337424.
KEGGidre:337424.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC065942 mRNA. Translation: AAH65942.1.
RefSeqiNP_991129.1. NM_205566.1.
UniGeneiDr.78116.

3D structure databases

ProteinModelPortaliQ6NZW8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000019311.

Proteomic databases

PaxDbiQ6NZW8.
PRIDEiQ6NZW8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000014552; ENSDARP00000019311; ENSDARG00000006915.
GeneIDi337424.
KEGGidre:337424.

Organism-specific databases

CTDi337424.
ZFINiZDB-GENE-030131-9370. arl8ba.

Phylogenomic databases

eggNOGiKOG0075. Eukaryota.
ENOG410XNUK. LUCA.
GeneTreeiENSGT00830000128269.
HOGENOMiHOG000163692.
HOVERGENiHBG105214.
InParanoidiQ6NZW8.
KOiK07955.
OMAiFFQSGQF.
OrthoDBiEOG091G0USZ.
PhylomeDBiQ6NZW8.
TreeFamiTF105470.

Miscellaneous databases

PROiQ6NZW8.

Gene expression databases

BgeeiENSDARG00000006915.
ExpressionAtlasiQ6NZW8. differential.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR024156. Small_GTPase_ARF.
IPR006689. Small_GTPase_ARF/SAR.
[Graphical view]
PfamiPF00025. Arf. 1 hit.
[Graphical view]
PRINTSiPR00328. SAR1GTPBP.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51417. ARF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAR8BA_DANRE
AccessioniPrimary (citable) accession number: Q6NZW8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 18, 2006
Last sequence update: July 5, 2004
Last modified: November 30, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.