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Protein

Transcription factor CP2

Gene

tfcp2

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May function as a transcription factor.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor CP2
Gene namesi
Name:tfcp2
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-485720. tfcp2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 507507Transcription factor CP2PRO_0000228005Add
BLAST

Interactioni

Subunit structurei

Component of the SSP (stage selector protein) complex, which appears to be a heteromer of TFCP2 and 2 copies of NFE4.By similarity

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni133 – 395263DNA-bindingBy similarityAdd
BLAST

Sequence similaritiesi

Belongs to the grh/CP2 family. CP2 subfamily.Curated

Phylogenomic databases

HOGENOMiHOG000230625.
HOVERGENiHBG053805.
InParanoidiQ6NZH6.
KOiK09275.

Family and domain databases

InterProiIPR007604. CP2.
IPR013761. SAM/pointed.
[Graphical view]
PfamiPF04516. CP2. 1 hit.
[Graphical view]
SUPFAMiSSF47769. SSF47769. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6NZH6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAWALKLPLA DEVIESGLVQ DFDASLSGIG QELGAGAYSM SDVLALPIFK
60 70 80 90 100
QEESSLPSEN ENKILPFQYV LCTATSPAVK LHEETLTYLN QGQSYEIRML
110 120 130 140 150
DNRKMGELPE LNGKLVKSIF RVVFHDRRLQ YTEHQQLEGW RWNRPGDRIL
160 170 180 190 200
DIDIPMSVGI IDPRANPTQL NTVEFLWDPA KRTSVFIQVH CISTEFTMRK
210 220 230 240 250
HGGEKGVPFR VQIDTFKENE NGEYTEHLHS ASCQIKVFKP KGADRKQKTD
260 270 280 290 300
REKMEKRTPQ EKEKYQPSYE TTILTECSPW PEITYVSNAP SPGFNSSHNS
310 320 330 340 350
FPIGEGNGSP NHQPEPPAPI VDVSAGLTPI QNLLPTSTPQ EAQQWLHRNR
360 370 380 390 400
FAAFSRLFTN FSGADLLKLT RDDVIQICGP ADGIRLFNAL KGRMVRPRLT
410 420 430 440 450
IYVCQESQQL REQQQQHKHE NGEAGNSAFY VYHAIYLEEM TAIELTEKIA
460 470 480 490 500
QLFSISPHQI NQIYKQGPTG IHVLISDEMI QNFQDESCFI LDTMKAETND

SYHIILK
Length:507
Mass (Da):57,634
Last modified:July 5, 2004 - v1
Checksum:iCCE404A4C160FF46
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC066130 mRNA. Translation: AAH66130.1.
RefSeqiNP_991396.1. NM_205827.1.
UniGeneiStr.862.

Genome annotation databases

GeneIDi403094.
KEGGixtr:403094.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC066130 mRNA. Translation: AAH66130.1.
RefSeqiNP_991396.1. NM_205827.1.
UniGeneiStr.862.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi403094.
KEGGixtr:403094.

Organism-specific databases

CTDi7024.
XenbaseiXB-GENE-485720. tfcp2.

Phylogenomic databases

HOGENOMiHOG000230625.
HOVERGENiHBG053805.
InParanoidiQ6NZH6.
KOiK09275.

Family and domain databases

InterProiIPR007604. CP2.
IPR013761. SAM/pointed.
[Graphical view]
PfamiPF04516. CP2. 1 hit.
[Graphical view]
SUPFAMiSSF47769. SSF47769. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Embryo.

Entry informationi

Entry nameiTFCP2_XENTR
AccessioniPrimary (citable) accession number: Q6NZH6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 21, 2006
Last sequence update: July 5, 2004
Last modified: February 17, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.