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Protein
Submitted name:

Ly9 protein

Gene

Ly9

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Ly9 proteinImported
Gene namesi
Name:Ly9Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:96885. Ly9.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei445 – 46521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3838Sequence analysisAdd
BLAST
Chaini39 – 645607Sequence analysisPRO_5004278794Add
BLAST

Proteomic databases

PaxDbiQ6NZB6.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000069319.

Structurei

3D structure databases

ProteinModelPortaliQ6NZB6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini148 – 22477Ig-like (immunoglobulin-like)InterPro annotationAdd
BLAST
Domaini353 – 43179Ig-like (immunoglobulin-like)InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410JJ3F. Eukaryota.
ENOG410ZAYK. LUCA.
HOVERGENiHBG030765.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
[Graphical view]
PfamiPF13895. Ig_2. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 2 hits.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 4 hits.
PROSITEiPS50835. IG_LIKE. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q6NZB6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
DWALGPLSEN PRMSQQQIFS PILWIPLLFL LMGLGASGKE TPPTVISGML
60 70 80 90 100
GGSVTFSLNI SKDAEIEHII WNCPPKALAL VFYKKDITIL DKGYNGRLKV
110 120 130 140 150
SEDGYSLYMS NLTKSDSGSY HAQINQKNVI LTTNKEFTLH IYEKLQKPQI
160 170 180 190 200
IVESVTPSDT DSCTFTLICT VKGTKDSVQY SWTREDTHLN TYDGSHTLRV
210 220 230 240 250
SQSVCDPDLP YTCKAWNPVS QNSSQPVRIW QFCTGASRRK TAAGKTVVGI
260 270 280 290 300
LGEPVTLPLE FRATRATKNV VWVFNTSVIS QERRGAATAD SRRKPKGSEE
310 320 330 340 350
RRVRTSDQDQ SLKISQLKME DAGPYHAYVC SEASRDPSVR HFTLLVYKRL
360 370 380 390 400
EKPSVTKSPV HMMNGICEVV LTCSVDGGGN NVTYTWMPLQ NKAVMSQGKS
410 420 430 440 450
HLNVSWESGE HLPNFTCTAH NPVSNSSSQF SSGTICSGPE RNKRFWLLLL
460 470 480 490 500
LVLLLLMLIG GCFILRKKKQ CSSLATRYRQ AEVPAEIPET PTGHGQFSVL
510 520 530 540 550
SQRYKKLDMS AKTTRHQPTP TSDTSSESSA TTEEDDEKTR MHSTANSRNQ
560 570 580 590 600
VYDLVTHQDI AHALAYEGQV EYEAITPYDK VDGSMDEEDT AYIQVSLNVQ
610 620 630 640
GETPLPQKKE DSNTIYCSVQ KPKKTAQTPQ QDAESPETPT YENFT
Length:645
Mass (Da):71,884
Last modified:July 5, 2004 - v1
Checksum:i316EF183DFD510BB
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC066212 mRNA. Translation: AAH66212.1.
UniGeneiMm.560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC066212 mRNA. Translation: AAH66212.1.
UniGeneiMm.560.

3D structure databases

ProteinModelPortaliQ6NZB6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000069319.

Proteomic databases

PaxDbiQ6NZB6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:96885. Ly9.

Phylogenomic databases

eggNOGiENOG410JJ3F. Eukaryota.
ENOG410ZAYK. LUCA.
HOVERGENiHBG030765.

Miscellaneous databases

ChiTaRSiLy9. mouse.
SOURCEiSearch...

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
[Graphical view]
PfamiPF13895. Ig_2. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 2 hits.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 4 hits.
PROSITEiPS50835. IG_LIKE. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6NCrImported.
    Tissue: Hematopoietic Stem CellImported.

Entry informationi

Entry nameiQ6NZB6_MOUSE
AccessioniPrimary (citable) accession number: Q6NZB6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: February 17, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.